Extraction, purification, structural characterization, and gut microbiota relationship of polysaccharides: A review

Y Huang, H Chen, K Zhang, Y Lu, Q Wu, J Chen… - International Journal of …, 2022 - Elsevier
Intestinal dysbiosis is one of the major causes of the occurrence of metabolic syndromes,
such as obesity, diabetes, nonalcoholic fatty liver disease, and cardiovascular diseases …

dbCAN3: automated carbohydrate-active enzyme and substrate annotation

J Zheng, Q Ge, Y Yan, X Zhang, L Huang… - Nucleic Acids …, 2023 - academic.oup.com
Carbohydrate active enzymes (CAZymes) are made by various organisms for complex
carbohydrate metabolism. Genome mining of CAZymes has become a routine data analysis …

Taxonomic and carbon metabolic diversification of Bathyarchaeia during its coevolution history with early Earth surface environment

J Hou, Y Wang, P Zhu, N Yang, L Liang, T Yu, M Niu… - Science …, 2023 - science.org
Bathyarchaeia, as one of the most abundant microorganisms on Earth, play vital roles in the
global carbon cycle. However, our understanding of their origin, evolution, and ecological …

dbCAN-seq update: CAZyme gene clusters and substrates in microbiomes

J Zheng, B Hu, X Zhang, Q Ge, Y Yan… - Nucleic Acids …, 2023 - academic.oup.com
C arbohydrate A ctive En Zymes (CAZymes) are significantly important for microbial
communities to thrive in carbohydrate rich environments such as animal guts, agricultural …

[HTML][HTML] The landscape and perspectives of the human gut metaproteomics

Z Sun, Z Ning, D Figeys - Molecular & Cellular Proteomics, 2024 - Elsevier
The human gut microbiome is closely associated with human health and diseases.
Metaproteomics has emerged as a valuable tool for studying the functionality of the gut …

Conserved unique peptide patterns (CUPP) online platform: peptide-based functional annotation of carbohydrate active enzymes

K Barrett, CJ Hunt, L Lange, AS Meyer - Nucleic Acids Research, 2020 - academic.oup.com
The CUPP platform includes a web server for functional annotation and sub-grou** of
carbohydrate active enzymes (CAZymes) based on a novel peptide-based similarity …

Structural basis of the strict specificity of a bacterial GH31 α-1, 3-glucosidase for nigerooligosaccharides

M Ikegaya, T Moriya, N Adachi, M Kawasaki… - Journal of Biological …, 2022 - Elsevier
Carbohydrate-active enzymes are involved in the degradation, biosynthesis, and
modification of carbohydrates and vary with the diversity of carbohydrates. The glycoside …

Multiple profile models extract features from protein sequence data and resolve functional diversity of very different protein families

R Vicedomini, JP Bouly, E Laine… - Molecular biology …, 2022 - academic.oup.com
Functional classification of proteins from sequences alone has become a critical bottleneck
in understanding the myriad of protein sequences that accumulate in our databases. The …

Integrated omic profiling of the medicinal mushroom Inonotus obliquus under submerged conditions

J Hao, X Wang, Y Shi, L Li, J Chu, J Li, W Lin, T Yu… - BMC genomics, 2023 - Springer
Abstract Background The Inonotus obliquus mushroom, a wondrous fungus boasting edible
and medicinal qualities, has been widely used as a folk medicine and shown to have many …

Cover crop** reduces the negative effect of salinity on soil microbiomes

D Dasgupta, M Ries, K Walter… - Journal of …, 2023 - Wiley Online Library
Introduction Soil salinization is a major abiotic stress that imposes high osmotic stress on
plant growth, thereby limiting crop productivity. It also acts as an environmental filter for …