The minimum information about a proteomics experiment (MIAPE)

CF Taylor, NW Paton, KS Lilley, PA Binz… - Nature …, 2007 - nature.com
Both the generation and the analysis of proteomics data are now widespread, and high-
throughput approaches are commonplace. Protocols continue to increase in complexity as …

Genomic fluidity and pathogenic bacteria: applications in diagnostics, epidemiology and intervention

N Ahmed, U Dobrindt, J Hacker… - Nature reviews …, 2008 - nature.com
The increasing availability of DNA-sequence information for multiple pathogenic and non-
pathogenic variants of individual bacterial species has indicated that both DNA acquisition …

IMEx: imperfect microsatellite extractor

SB Mudunuri, HA Nagarajaram - Bioinformatics, 2007 - academic.oup.com
Motivation: Microsatellites, also known as simple sequence repeats, are the tandem repeats
of nucleotide motifs of the size 1–6 bp found in every genome known so far. Their …

Whole genome identification of Mycobacterium tuberculosisvaccine candidates by comprehensive data mining and bioinformatic analyses

A Zvi, N Ariel, J Fulkerson, JC Sadoff… - BMC medical …, 2008 - Springer
Background Mycobacterium tuberculosis, the causative agent of tuberculosis (TB), infects~ 8
million annually culminating in~ 2 million deaths. Moreover, about one third of the …

Whole genome sequence analysis of Mycobacterium bovis bacillus Calmette–Guérin (BCG) Tokyo 172: a comparative study of BCG vaccine substrains

M Seki, I Honda, I Fujita, I Yano, S Yamamoto… - Vaccine, 2009 - Elsevier
To investigate the molecular characteristics of bacillus Calmette–Guérin (BCG) vaccines, the
complete genomic sequence of Mycobacterium bovis BCG Tokyo 172 was determined, and …

Inducible Nitric Oxide Synthase (iNOS) Gene Polymorphism and Disease Prevalence

T Qidwai, F Jamal - Scandinavian journal of immunology, 2010 - Wiley Online Library
Nitric oxide synthase gene is present on chromosome 17 and has been implicated in a wide
variety of diseases. The nitric oxide synthase enzyme forms nitric oxide that besides being a …

Analysis of the genetic variation in Mycobacterium tuberculosis strains by multiple genome alignments

A Cubillos-Ruiz, J Morales, MM Zambrano - BMC research notes, 2008 - Springer
Background The recent determination of the complete nucleotide sequence of several
Mycobacterium tuberculosis (MTB) genomes allows the use of comparative genomics as a …

Insights into genome plasticity and gene regulation in Orientia tsutsugamushi through genome-wide mining of microsatellite markers

S Panda, SK Swain, BP Sahu, R Sarangi - 3 Biotech, 2023 - Springer
Microsatellite markers are being used for molecular identification and characterization as
well as estimation of evolution patterns due to their highly polymorphic nature. The repeats …

Simple sequence repeats in mycobacterial genomes

VB Sreenu, P Kumar, J Nagaraju… - Journal of Biosciences, 2007 - Springer
Simple sequence repeats (SSRs) or microsatellites are the repetitive nucleotide sequences
of motifs of length 1–6 bp. They are scattered throughout the genomes of all the known …

[HTML][HTML] Label-Free Comparative Proteomics of Differentially Expressed Mycobacterium tuberculosis Protein in Rifampicin-Related Drug-Resistant Strains

N Ullah, L Hao, JL Banga Ndzouboukou, S Chen, Y Wu… - Pathogens, 2021 - mdpi.com
Rifampicin (RIF) is one of the most important first-line anti-tuberculosis (TB) drugs, and more
than 90% of RIF-resistant (RR) Mycobacterium tuberculosis clinical isolates belong to …