Artificial intelligence for drug discovery: Are we there yet?

C Hasselgren, TI Oprea - Annual Review of Pharmacology and …, 2024 - annualreviews.org
Drug discovery is adapting to novel technologies such as data science, informatics, and
artificial intelligence (AI) to accelerate effective treatment development while reducing costs …

[HTML][HTML] Illuminating the druggable genome: Pathways to progress

KR Sharma, CM Colvis, GP Rodgers, DM Sheeley - Drug discovery today, 2024 - Elsevier
There are∼ 4500 genes within the 'druggable genome', the subset of the human genome
that expresses proteins able to bind drug-like molecules, yet existing drugs only target a few …

Pharos 2023: an integrated resource for the understudied human proteome

KJ Kelleher, TK Sheils, SL Mathias, JJ Yang… - Nucleic acids …, 2023 - academic.oup.com
Abstract The Illuminating the Druggable Genome (IDG) project aims to improve our
understanding of understudied proteins and our ability to study them in the context of …

Cytoscape stringApp 2.0: analysis and visualization of heterogeneous biological networks

NT Doncheva, JH Morris, H Holze… - Journal of proteome …, 2022 - ACS Publications
Biological networks are often used to represent complex biological systems, which can
contain several types of entities. Analysis and visualization of such networks is supported by …

PTMD 2.0: an updated database of disease-associated post-translational modifications

X Huang, Z Feng, D Liu, Y Gou, M Chen… - Nucleic Acids …, 2025 - academic.oup.com
Various post-translational modifications (PTMs) participate in nearly all aspects of biological
processes by regulating protein functions, and aberrant states of PTMs are frequently …

Toxicology knowledge graph for structural birth defects

JE Evangelista, DJB Clarke, Z **e, GB Marino… - Communications …, 2023 - nature.com
Background Birth defects are functional and structural abnormalities that impact about 1 in
33 births in the United States. They have been attributed to genetic and other factors such as …

Glioblastoma and its treatment are associated with extensive accelerated brain aging

AP Ainslie, M Klaver, DC Voshart, E Gerrits… - Aging …, 2024 - Wiley Online Library
Progressive neurocognitive dysfunction is the leading cause of a reduced quality of life in
patients with primary brain tumors. Understanding how the human brain responds to cancer …

TRIM28-dependent developmental heterogeneity determines cancer susceptibility through distinct epigenetic states

I Panzeri, L Fagnocchi, S Apostle, M Tompkins… - Nature Cancer, 2025 - nature.com
Mutations in cancer risk genes increase susceptibility, but not all carriers develop cancer.
Indeed, while DNA mutations are necessary drivers of cancer, only a small subset of …

[HTML][HTML] PCPE-2 (procollagen C-proteinase enhancer-2): the NON-IDENTICAL twin of PCPE-1

M Napoli, J Bauer, C Bonod, S Vadon-Le Goff, C Moali - Matrix Biology, 2024 - Elsevier
PCPE-2 was discovered at the beginning of this century, and was soon identified as a close
homolog of PCPE-1 (procollagen C-proteinase enhancer 1). After the demonstration that it …

[HTML][HTML] Overview of the knowledge management center for illuminating the druggable genome

TI Oprea, C Bologa, J Holmes, S Mathias… - Drug Discovery …, 2024 - Elsevier
The Knowledge Management Center (KMC) for the Illuminating the Druggable Genome
(IDG) project aims to aggregate, update, and articulate protein-centric data knowledge for …