Incongruence in the phylogenomics era
Genome-scale data and the development of novel statistical phylogenetic approaches have
greatly aided the reconstruction of a broad sketch of the tree of life and resolved many of its …
greatly aided the reconstruction of a broad sketch of the tree of life and resolved many of its …
Common methods for phylogenetic Tree Construction and their implementation in R
Y Zou, Z Zhang, Y Zeng, H Hu, Y Hao, S Huang, B Li - Bioengineering, 2024 - mdpi.com
A phylogenetic tree can reflect the evolutionary relationships between species or gene
families, and they play a critical role in modern biological research. In this review, we …
families, and they play a critical role in modern biological research. In this review, we …
Weighted ASTRID: fast and accurate species trees from weighted internode distances
Background Species tree estimation is a basic step in many biological research projects, but
is complicated by the fact that gene trees can differ from the species tree due to processes …
is complicated by the fact that gene trees can differ from the species tree due to processes …
Rapid Evolution of Host Repertoire and Geographic Range in a Young and Diverse Genus of Montane Butterflies
Evolutionary changes in geographic distribution and larval host plants may promote the
rapid diversification of montane insects, but this scenario has been rarely investigated. We …
rapid diversification of montane insects, but this scenario has been rarely investigated. We …
Phylogenomics of Neogastropoda: the backbone hidden in the bush
The molluskan order Neogastropoda encompasses over 15,000 almost exclusively marine
species playing important roles in benthic communities and in the economies of coastal …
species playing important roles in benthic communities and in the economies of coastal …
Pangenomic analysis of the bacterial cellulose-producing genera Komagataeibacter and Novacetimonas
Bacterial cellulose (BC) holds significant commercial potential due to its unique structural
and chemical properties, making it suitable for applications in electronics, medicine, and …
and chemical properties, making it suitable for applications in electronics, medicine, and …
Phylogenomic workflow for uncultivable microbial eukaryotes using single-cell RNA sequencing− A case study with planktonic ciliates (Ciliophora, Oligotrichea)
Phylogenetic analyses increasingly rely on genomic and transcriptomic data to produce
better supported inferences on the evolutionary relationships among microbial eukaryotes …
better supported inferences on the evolutionary relationships among microbial eukaryotes …
Integrating phylogenies with chronology to assemble the tree of life
Reconstructing the global Tree of Life necessitates computational approaches to integrate
numerous molecular phylogenies with limited species overlap into a comprehensive …
numerous molecular phylogenies with limited species overlap into a comprehensive …
Terraces in species tree inference from gene trees
A terrace in a phylogenetic tree space is a region where all trees contain the same set of
subtrees, due to certain patterns of missing data among the taxa sampled, resulting in an …
subtrees, due to certain patterns of missing data among the taxa sampled, resulting in an …
Advances in lineage sorting theories and their detection methods
Y Lv, Z Wang, Y **ao, Z He, C Wu… - Biodiversity Science, 2024 - biodiversity-science.net
Background & Aims: Lineage sorting (LS) refers to the process in which multiple populations
are descended from a common ancestral population or species and are now reproductively …
are descended from a common ancestral population or species and are now reproductively …