Multiomic analysis of familial adenomatous polyposis reveals molecular pathways associated with early tumorigenesis

ED Esplin, C Hanson, S Wu, AM Horning, N Barapour… - Nature Cancer, 2024 - nature.com
Familial adenomatous polyposis (FAP) is a genetic disease causing hundreds of
premalignant polyps in affected persons and is an ideal model to study transitions of early …

Do not be scared of the genome's 5th base—Explaining phenotypic variability and evolutionary dynamics through DNA methylation analysis

J Tost - Molecular Ecology Resources, 2023 - Wiley Online Library
Epigenetic processes have taken center stage for the investigation of many biological
processes, and epigenetic modifications have shown to influence phenotype, morphology …

Global loss of promoter–enhancer connectivity and rebalancing of gene expression during early colorectal cancer carcinogenesis

Y Zhu, H Lee, S White, AK Weimer, E Monte… - Nature Cancer, 2024 - nature.com
Abstract Although three-dimensional (3D) genome architecture is crucial for gene regulation,
its role in disease remains elusive. We traced the evolution and malignant transformation of …

L0 segmentation enables data-driven concise representations of diverse epigenomic data

AT Balcı, M Chikina - bioRxiv, 2023 - biorxiv.org
Motivation Epigenetic assays using next-generation sequencing (NGS) have furthered our
understanding of the functional genomic regions and the mechanisms of gene regulation …