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Mechanisms of lncRNA biogenesis as revealed by nascent transcriptomics
T Nojima, NJ Proudfoot - Nature reviews Molecular cell biology, 2022 - nature.com
Mammalian genomes express two principal gene categories through RNA polymerase II-
mediated transcription: protein-coding transcription units and non-coding RNA transcription …
mediated transcription: protein-coding transcription units and non-coding RNA transcription …
3′-end processing of eukaryotic mRNA: machinery, regulation, and impact on gene expression
V Boreikaitė, LA Passmore - Annual review of biochemistry, 2023 - annualreviews.org
Formation of the 3′ end of a eukaryotic mRNA is a key step in the production of a mature
transcript. This process is mediated by a number of protein factors that cleave the pre …
transcript. This process is mediated by a number of protein factors that cleave the pre …
DDX21 mediates co-transcriptional RNA m6A modification to promote transcription termination and genome stability
JD Hao, QL Liu, MX Liu, X Yang, LM Wang, SY Su… - Molecular Cell, 2024 - cell.com
Summary N6-methyladenosine (m 6 A) is a crucial RNA modification that regulates diverse
biological processes in human cells, but its co-transcriptional deposition and functions …
biological processes in human cells, but its co-transcriptional deposition and functions …
Knowing when to stop: transcription termination on protein-coding genes by eukaryotic RNAPII
JB Rodríguez-Molina, S West, LA Passmore - Molecular cell, 2023 - cell.com
Gene expression is controlled in a dynamic and regulated manner to allow for the consistent
and steady expression of some proteins as well as the rapidly changing production of other …
and steady expression of some proteins as well as the rapidly changing production of other …
Transcription elongation can affect genome 3D structure
S Heinz, L Texari, MGB Hayes, M Urbanowski… - Cell, 2018 - cell.com
How transcription affects genome 3D organization is not well understood. We found that
during influenza A (IAV) infection, rampant transcription rapidly reorganizes host cell …
during influenza A (IAV) infection, rampant transcription rapidly reorganizes host cell …
Causes and consequences of RNA polymerase II stalling during transcript elongation
M Noe Gonzalez, D Blears, JQ Svejstrup - Nature reviews Molecular …, 2021 - nature.com
The journey of RNA polymerase II (Pol II) as it transcribes a gene is anything but a smooth
ride. Transcript elongation is discontinuous and can be perturbed by intrinsic regulatory …
ride. Transcript elongation is discontinuous and can be perturbed by intrinsic regulatory …
Nascent RNA analyses: tracking transcription and its regulation
The programmes that direct an organism's development and maintenance are encoded in its
genome. Decoding of this information begins with regulated transcription of genomic DNA …
genome. Decoding of this information begins with regulated transcription of genomic DNA …
Transcriptional reprogramming at the intersection of the heat shock response and proteostasis
JC Pessa, J Joutsen, L Sistonen - Molecular cell, 2024 - cell.com
Cellular homeostasis is constantly challenged by a myriad of extrinsic and intrinsic stressors.
To mitigate the stress-induced damage, cells activate transient survival programs. The heat …
To mitigate the stress-induced damage, cells activate transient survival programs. The heat …
Integrator recruits protein phosphatase 2A to prevent pause release and facilitate transcription termination
Efficient release of promoter-proximally paused RNA Pol II into productive elongation is
essential for gene expression. Recently, we reported that the Integrator complex can bind …
essential for gene expression. Recently, we reported that the Integrator complex can bind …
The integrator complex attenuates promoter-proximal transcription at protein-coding genes
The transition of RNA polymerase II (Pol II) from initiation to productive elongation is a
central, regulated step in metazoan gene expression. At many genes, Pol II pauses stably in …
central, regulated step in metazoan gene expression. At many genes, Pol II pauses stably in …