Comparative genomics at the vertebrate extremes

D Boffelli, MA Nobrega, EM Rubin - Nature Reviews Genetics, 2004 - nature.com
Annotators of the human genome are increasingly exploiting comparisons with genomes at
both the distal and proximal evolutionary edges of the vertebrate tree. Despite the sequence …

Highly conserved non-coding sequences are associated with vertebrate development

A Woolfe, M Goodson, DK Goode, P Snell… - PLoS …, 2005 - journals.plos.org
In addition to protein coding sequence, the human genome contains a significant amount of
regulatory DNA, the identification of which is proving somewhat recalcitrant to both in silico …

[КНИГА][B] The toxicology of fishes

RT Di Giulio, DE Hinton - 2008 - taylorfrancis.com
When looking for a book on fish toxicology, you might find one that discusses the
biochemical and molecular aspects, or one that focuses aquatic toxicology in general. You …

Enhancer sequence conservation between vertebrates is favoured in developmental regulator genes

C Plessy, T Dickmeis, F Chalmel, U Strähle - Trends in Genetics, 2005 - cell.com
Sequence conservation has been used to find genes and to pinpoint functional non-coding
sequences such as transcriptional regulatory elements. In this article, we analysed the …

Transcriptional profiling reveals barcode-like toxicogenomic responses in the zebrafish embryo

L Yang, JR Kemadjou, C Zinsmeister, M Bauer… - Genome biology, 2007 - Springer
Background Early life stages are generally most sensitive to toxic effects. Our knowledge on
the action of manmade chemicals on the develo** vertebrate embryo is, however, rather …

Nucleus pulposus notochord cells secrete connective tissue growth factor and up‐regulate proteoglycan expression by intervertebral disc chondrocytes

WM Erwin, K Ashman, P O'Donnel… - Arthritis & Rheumatism …, 2006 - Wiley Online Library
Objective To identify the components of conditioned medium obtained from intervertebral
disc nucleus pulposus–derived canine notochord cells, and to evaluate the capacity of such …

Regulation of hypocretin (orexin) expression in embryonic zebrafish

JH Faraco, L Appelbaum, W Marin, SE Gaus… - Journal of Biological …, 2006 - ASBMB
Hypocretins/orexins are neuropeptides involved in the regulation of sleep and energy
balance in mammals. Conservation of gene sequence, hypothalamic localization of cell …

Control of tissue growth by Yap relies on cell density and F-actin in zebrafish fin regeneration

R Mateus, R Lourenço, Y Fang, G Brito… - …, 2015 - journals.biologists.com
Caudal fin regeneration is characterized by a proliferation boost in the mesenchymal
blastema that is controlled precisely in time and space. This allows a gradual and robust …

Ancient duplicated conserved noncoding elements in vertebrates: a genomic and functional analysis

GK McEwen, A Woolfe, D Goode, T Vavouri… - Genome …, 2006 - genome.cshlp.org
Fish–mammal genomic comparisons have proved powerful in identifying conserved
noncoding elements likely to be cis-regulatory in nature, and the majority of those tested in …

[HTML][HTML] Cooperation of sonic hedgehog enhancers in midline expression

R Ertzer, F Müller, Y Hadzhiev, S Rathnam… - Developmental …, 2007 - Elsevier
In zebrafish, as in other vertebrates, the secreted signalling molecule Sonic hedgehog (Shh)
is expressed in organiser regions such as the embryonic midline and the zona limitans …