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De novo protein design, a retrospective
IV Korendovych, WF DeGrado - Quarterly reviews of biophysics, 2020 - cambridge.org
Proteins are molecular machines whose function depends on their ability to achieve
complex folds with precisely defined structural and dynamic properties. The rational design …
complex folds with precisely defined structural and dynamic properties. The rational design …
De novo metalloprotein design
Natural metalloproteins perform many functions—ranging from sensing to electron transfer
and catalysis—in which the position and property of each ligand and metal are dictated by …
and catalysis—in which the position and property of each ligand and metal are dictated by …
Catalytic peptide assemblies
O Zozulia, MA Dolan, IV Korendovych - Chemical Society Reviews, 2018 - pubs.rsc.org
Self-assembly of molecules often results in new emerging properties. Even very short
peptides can self-assemble into structures with a variety of physical and structural …
peptides can self-assemble into structures with a variety of physical and structural …
Synthetic biology for the directed evolution of protein biocatalysts: navigating sequence space intelligently
The amino acid sequence of a protein affects both its structure and its function. Thus, the
ability to modify the sequence, and hence the structure and activity, of individual proteins in …
ability to modify the sequence, and hence the structure and activity, of individual proteins in …
Protein design: toward functional metalloenzymes
F Yu, VM Cangelosi, ML Zastrow, M Tegoni… - Chemical …, 2014 - ACS Publications
Protein design is a valuable tool for understanding the fundamental factors that dictate
protein structure and function. The field of protein design has seen significant progress over …
protein structure and function. The field of protein design has seen significant progress over …
Catalysis and Electron Transfer in De Novo Designed Metalloproteins
One of the hallmark advances in our understanding of metalloprotein function is showcased
in our ability to design new, non-native, catalytically active protein scaffolds. This review …
in our ability to design new, non-native, catalytically active protein scaffolds. This review …
Designing functional metalloproteins: From structural to catalytic metal sites
ML Zastrow, VL Pecoraro - Coordination Chemistry Reviews, 2013 - Elsevier
Metalloenzymes efficiently catalyze some of the most important and difficult reactions in
nature. For many years, coordination chemists have effectively used small molecule models …
nature. For many years, coordination chemists have effectively used small molecule models …
Influence of Active Site Location on Catalytic Activity in de Novo-Designed Zinc Metalloenzymes
ML Zastrow, VL Pecoraro - Journal of the American Chemical …, 2013 - ACS Publications
While metalloprotein design has now yielded a number of successful metal-bound and even
catalytically active constructs, the question of where to put a metal site along a linear …
catalytically active constructs, the question of where to put a metal site along a linear …
Design of a Three‐Helix Bundle Capable of binding heavy metals in a Triscysteine environment
S Chakraborty, J Yudenfreund Kravitz… - Angewandte Chemie …, 2011 - Wiley Online Library
An important objective of de novo protein design is the preparation of metalloproteins, as
many natural systems contain metals that play crucial roles for the function and/or structural …
many natural systems contain metals that play crucial roles for the function and/or structural …
De Novo Protein Design as a Methodology for Synthetic Bioinorganic Chemistry
CS Mocny, VL Pecoraro - Accounts of chemical research, 2015 - ACS Publications
Conspectus The major advances in molecular and structural biology and automated peptide
and DNA synthesis of the 1970s and 1980s generated fertile conditions in the 1990s for the …
and DNA synthesis of the 1970s and 1980s generated fertile conditions in the 1990s for the …