De novo protein design, a retrospective

IV Korendovych, WF DeGrado - Quarterly reviews of biophysics, 2020 - cambridge.org
Proteins are molecular machines whose function depends on their ability to achieve
complex folds with precisely defined structural and dynamic properties. The rational design …

De novo metalloprotein design

MJ Chalkley, SI Mann, WF DeGrado - Nature Reviews Chemistry, 2022 - nature.com
Natural metalloproteins perform many functions—ranging from sensing to electron transfer
and catalysis—in which the position and property of each ligand and metal are dictated by …

Catalytic peptide assemblies

O Zozulia, MA Dolan, IV Korendovych - Chemical Society Reviews, 2018 - pubs.rsc.org
Self-assembly of molecules often results in new emerging properties. Even very short
peptides can self-assemble into structures with a variety of physical and structural …

Synthetic biology for the directed evolution of protein biocatalysts: navigating sequence space intelligently

A Currin, N Swainston, PJ Day, DB Kell - Chemical Society Reviews, 2015 - pubs.rsc.org
The amino acid sequence of a protein affects both its structure and its function. Thus, the
ability to modify the sequence, and hence the structure and activity, of individual proteins in …

Protein design: toward functional metalloenzymes

F Yu, VM Cangelosi, ML Zastrow, M Tegoni… - Chemical …, 2014 - ACS Publications
Protein design is a valuable tool for understanding the fundamental factors that dictate
protein structure and function. The field of protein design has seen significant progress over …

Catalysis and Electron Transfer in De Novo Designed Metalloproteins

KJ Koebke, TBJ Pinter, WC Pitts, VL Pecoraro - Chemical reviews, 2022 - ACS Publications
One of the hallmark advances in our understanding of metalloprotein function is showcased
in our ability to design new, non-native, catalytically active protein scaffolds. This review …

Designing functional metalloproteins: From structural to catalytic metal sites

ML Zastrow, VL Pecoraro - Coordination Chemistry Reviews, 2013 - Elsevier
Metalloenzymes efficiently catalyze some of the most important and difficult reactions in
nature. For many years, coordination chemists have effectively used small molecule models …

Influence of Active Site Location on Catalytic Activity in de Novo-Designed Zinc Metalloenzymes

ML Zastrow, VL Pecoraro - Journal of the American Chemical …, 2013 - ACS Publications
While metalloprotein design has now yielded a number of successful metal-bound and even
catalytically active constructs, the question of where to put a metal site along a linear …

Design of a Three‐Helix Bundle Capable of binding heavy metals in a Triscysteine environment

S Chakraborty, J Yudenfreund Kravitz… - Angewandte Chemie …, 2011 - Wiley Online Library
An important objective of de novo protein design is the preparation of metalloproteins, as
many natural systems contain metals that play crucial roles for the function and/or structural …

De Novo Protein Design as a Methodology for Synthetic Bioinorganic Chemistry

CS Mocny, VL Pecoraro - Accounts of chemical research, 2015 - ACS Publications
Conspectus The major advances in molecular and structural biology and automated peptide
and DNA synthesis of the 1970s and 1980s generated fertile conditions in the 1990s for the …