Plant small heat shock proteins–evolutionary and functional diversity

ER Waters, E Vierling - New Phytologist, 2020 - Wiley Online Library
Small heat shock proteins (sHSPs) are an ubiquitous protein family found in archaea,
bacteria and eukaryotes. In plants, as in other organisms, sHSPs are upregulated by stress …

Omics approaches in effective selection and generation of potential plants for phytoremediation of heavy metal from contaminated resources

R Yadav, G Singh, AR Santal, NP Singh - Journal of environmental …, 2023 - Elsevier
Soil and water pollution, rapid industrialization, contaminated irrigation-water, increased
waste-production and surge in agricultural land leads to the accumulation of Heavy Metals …

Cepharanthine analogs mining and genomes of Stephania accelerate anti-coronavirus drug discovery

L Leng, Z Xu, B Hong, B Zhao, Y Tian, C Wang… - Nature …, 2024 - nature.com
Cepharanthine is a secondary metabolite isolated from Stephania. It has been reported that
it has anti-conronaviruses activities including severe acute respiratory syndrome …

Benchmarking transposable element annotation methods for creation of a streamlined, comprehensive pipeline

S Ou, W Su, Y Liao, K Chougule, JRA Agda… - Genome biology, 2019 - Springer
Background Sequencing technology and assembly algorithms have matured to the point
that high-quality de novo assembly is possible for large, repetitive genomes. Current …

A reference genome for pea provides insight into legume genome evolution

J Kreplak, MA Madoui, P Cápal, P Novák, K Labadie… - Nature …, 2019 - nature.com
We report the first annotated chromosome-level reference genome assembly for pea, Gregor
Mendel's original genetic model. Phylogenetics and paleogenomics show genomic …

LTR_retriever: a highly accurate and sensitive program for identification of long terminal repeat retrotransposons

S Ou, N Jiang - Plant physiology, 2018 - academic.oup.com
Long terminal repeat retrotransposons (LTR-RTs) are prevalent in plant genomes. The
identification of LTR-RTs is critical for achieving high-quality gene annotation. Based on the …

Gene duplication and evolution in recurring polyploidization–diploidization cycles in plants

X Qiao, Q Li, H Yin, K Qi, L Li, R Wang, S Zhang… - Genome biology, 2019 - Springer
Background The sharp increase of plant genome and transcriptome data provide valuable
resources to investigate evolutionary consequences of gene duplication in a range of taxa …

The pineapple genome and the evolution of CAM photosynthesis

R Ming, R VanBuren, CM Wai, H Tang, MC Schatz… - Nature …, 2015 - nature.com
Abstract Pineapple (Ananas comosus (L.) Merr.) is the most economically valuable crop
possessing crassulacean acid metabolism (CAM), a photosynthetic carbon assimilation …

The opium poppy genome and morphinan production

L Guo, T Winzer, X Yang, Y Li, Z Ning, Z He, R Teodor… - Science, 2018 - science.org
Morphinan-based painkillers are derived from opium poppy (Papaver somniferum L.). We
report a draft of the opium poppy genome, with 2.72 gigabases assembled into 11 …

Analysis of the Coptis chinensis genome reveals the diversification of protoberberine-type alkaloids

Y Liu, B Wang, S Shu, Z Li, C Song, D Liu, Y Niu… - Nature …, 2021 - nature.com
Abstract Chinese goldthread (Coptis chinensis Franch.), a member of the Ranunculales,
represents an important early-diverging eudicot lineage with diverse medicinal applications …