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Protein analysis by shotgun/bottom-up proteomics
According to Genome Sequencing Project statistics (http://www. ncbi. nlm. nih.
gov/genomes/static/gpstat. html), as of February 16, 2012, complete gene sequences have …
gov/genomes/static/gpstat. html), as of February 16, 2012, complete gene sequences have …
Proteomics standards initiative at twenty years: current activities and future work
The Human Proteome Organization (HUPO) Proteomics Standards Initiative (PSI) has been
successfully develo** guidelines, data formats, and controlled vocabularies (CVs) for the …
successfully develo** guidelines, data formats, and controlled vocabularies (CVs) for the …
Target-decoy search strategy for mass spectrometry-based proteomics
Accurate and precise methods for estimating incorrect peptide and protein identifications are
crucial for effective large-scale proteome analyses by tandem mass spectrometry. The target …
crucial for effective large-scale proteome analyses by tandem mass spectrometry. The target …
[HTML][HTML] Protein identification using MS/MS data
JS Cottrell - Journal of proteomics, 2011 - Elsevier
The subject of this tutorial is protein identification and characterisation by database
searching of MS/MS Data. Peptide Mass Fingerprinting is excluded because it is covered in …
searching of MS/MS Data. Peptide Mass Fingerprinting is excluded because it is covered in …
[HTML][HTML] The mzIdentML data standard for mass spectrometry-based proteomics results
We report the release of mzIdentML, an exchange standard for peptide and protein
identification data, designed by the Proteomics Standards Initiative. The format was …
identification data, designed by the Proteomics Standards Initiative. The format was …
[HTML][HTML] Best practice in reporting corona studies: Minimum information about Nanomaterial Biocorona Experiments (MINBE)
Characterisation of the adsorption of biomolecules, or a biocorona, on nanomaterials has
proliferated in the past 10 years, as protein corona studies provide molecular level insight …
proliferated in the past 10 years, as protein corona studies provide molecular level insight …
Proteomics standards initiative: fifteen years of progress and future work
The Proteomics Standards Initiative (PSI) of the Human Proteome Organization (HUPO) has
now been develo** and promoting open community standards and software tools in the …
now been develo** and promoting open community standards and software tools in the …
MIRAGE: the minimum information required for a glycomics experiment
The MIRAGE (minimum information required for a glycomics experiment) initiative was
founded in Seattle, WA, in November 2011 in order to develop guidelines for reporting the …
founded in Seattle, WA, in November 2011 in order to develop guidelines for reporting the …
The human eye proteome project: updates on an emerging proteome
The human eye is a complex organ consisting of multiple compartments with unique and
specialized properties that reflect their varied functions. Although there have been …
specialized properties that reflect their varied functions. Although there have been …
[HTML][HTML] A temporal examination of the planktonic and biofilm proteome of whole cell Pseudomonas aeruginosa PAO1 using quantitative mass spectrometry
AJ Park, K Murphy, JR Krieger, D Brewer… - Molecular & Cellular …, 2014 - Elsevier
Chronic polymicrobial lung infections are the chief complication in patients with cystic
fibrosis. The dominant pathogen in late-stage disease is Pseudomonas aeruginosa, which …
fibrosis. The dominant pathogen in late-stage disease is Pseudomonas aeruginosa, which …