Deep intronic mutations and human disease

R Vaz-Drago, N Custódio, M Carmo-Fonseca - Human genetics, 2017 - Springer
Next-generation sequencing has revolutionized clinical diagnostic testing. Yet, for a
substantial proportion of patients, sequence information restricted to exons and exon–intron …

Statistical analysis strategies for association studies involving rare variants

V Bansal, O Libiger, A Torkamani… - Nature Reviews Genetics, 2010 - nature.com
The limitations of genome-wide association (GWA) studies that focus on the phenotypic
influence of common genetic variants have motivated human geneticists to consider the …

Human Splicing Finder: an online bioinformatics tool to predict splicing signals

FO Desmet, D Hamroun, M Lalande… - Nucleic acids …, 2009 - academic.oup.com
Thousands of mutations are identified yearly. Although many directly affect protein
expression, an increasing proportion of mutations is now believed to influence mRNA …

[HTML][HTML] Systematic identification and analysis of exonic splicing silencers

Z Wang, ME Rolish, G Yeo, V Tung, M Mawson… - Cell, 2004 - cell.com
Exonic splicing silencers (ESSs) are cis-regulatory elements that inhibit the use of adjacent
splice sites, often contributing to alternative splicing (AS). To systematically identify ESSs, an …

hnRNP proteins and splicing control

R Martinez-Contreras, P Cloutier, L Shkreta… - Alternative splicing in …, 2007 - Springer
Proteins of the heterogeneous nuclear ribonucleoparticles (hnRNP) family form a structurally
diverse group of RNA binding proteins implicated in various functions in metazoans. Here …

Computational definition of sequence motifs governing constitutive exon splicing

XHF Zhang, LA Chasin - Genes & development, 2004 - genesdev.cshlp.org
We have searched for sequence motifs that contribute to the recognition of human pre-
mRNA splice sites by comparing the frequency of 8-mers in internal noncoding exons versus …

Use of minigene systems to dissect alternative splicing elements

TA Cooper - Methods, 2005 - Elsevier
Pre-mRNA splicing is an essential step for gene expression in higher eukaryotes. The
splicing efficiency of individual exons is determined by multiple features involving gene …

Implications of SARS-CoV-2 mutations for genomic RNA structure and host microRNA targeting

A Hosseini Rad SM, AD McLellan - International journal of molecular …, 2020 - mdpi.com
The SARS-CoV-2 virus is a recently-emerged zoonotic pathogen already well adapted to
transmission and replication in humans. Although the mutation rate is limited, recently …

Guidelines for antisense oligonucleotide design and insight into splice-modulating mechanisms

A Aartsma-Rus, L Van Vliet, M Hirschi, AAM Janson… - Molecular Therapy, 2009 - cell.com
Antisense oligonucleotides (AONs) can interfere with mRNA processing through RNase H–
mediated degradation, translational arrest, or modulation of splicing. The antisense …

Multiexon skip** leading to an artificial DMD protein lacking amino acids from exons 45 through 55 could rescue up to 63% of patients with Duchenne muscular …

C Béroud, S Tuffery‐Giraud, M Matsuo… - Human …, 2007 - Wiley Online Library
Approximately two‐thirds of Duchenne muscular dystrophy (DMD) patients show intragenic
deletions ranging from one to several exons of the DMD gene and leading to a premature …