Chromosome compartmentalization alterations in prostate cancer cell lines model disease progression

R San Martin, P Das, R Dos Reis Marques, Y Xu… - Journal of Cell …, 2022 - rupress.org
Prostate cancer aggressiveness and metastatic potential are influenced by gene expression
and genomic aberrations, features that can be influenced by the 3D structure of …

Double-strand break toxicity is chromatin context independent

A Friskes, L Koob, L Krenning… - Nucleic acids …, 2022 - academic.oup.com
Cells respond to double-strand breaks (DSBs) by activating DNA damage response
pathways, including cell cycle arrest. We have previously shown that a single double-strand …

Chromatin context-dependent effects of epigenetic drugs on CRISPR-Cas9 editing

R Schep, M Trauernicht, X Vergara… - Nucleic Acids …, 2024 - academic.oup.com
The efficiency and outcome of CRISPR/Cas9 editing depends on the chromatin state at the
cut site. It has been shown that changing the chromatin state can influence both the …

Chromatin protein complexes involved in gene repression in lamina-associated domains

SG Manzo, A Mazouzi, C Leemans, T van Schaik… - The EMBO …, 2024 - embopress.org
Lamina-associated domains (LADs) are large chromatin regions that are associated with the
nuclear lamina (NL) and form a repressive environment for transcription. The molecular …

At the nucleus of cancer: how the nuclear envelope controls tumor progression

F Paganelli, A Poli, S Truocchio, AM Martelli… - MedComm, 2025 - Wiley Online Library
Historically considered downstream effects of tumorigenesis—arising from changes in DNA
content or chromatin organization—nuclear alterations have long been seen as mere …

Genome-nuclear lamina interactions are multivalent and cooperative

L Dauban, M Eder, M de Haas… - bioRxiv, 2024 - biorxiv.org
Lamina-associated domains (LADs) are megabase-sized genomic regions that interact with
the nuclear lamina (NL). It is not yet understood how their interactions with the NL are …

Unexpected gene activation following CRISPR‐Cas9‐mediated genome editing

AG Manjón, S Linder, H Teunissen, A Friskes… - EMBO …, 2022 - embopress.org
The discovery of the Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR)
and its development as a genome editing tool has revolutionized the field of molecular …

Genome-wide in vivo dynamics of cohesin-mediated loop extrusion and its role in transcription activation

TM Popay, A Pant, F Munting, ME Black, N Haghani… - bioRxiv, 2024 - biorxiv.org
The organization of the genome in three-dimensional space is highly dynamic, yet how
these dynamics are regulated and the role they play in genome function is poorly …

Coordinated control of genome-nuclear lamina interactions by Topoisomerase 2B and Lamin B receptor

SG Manzo, T van Schaik, M de Haas, J Breda… - bioRxiv, 2024 - biorxiv.org
Lamina-associated domains (LADs) are megabase-sized genomic regions anchored to the
nuclear lamina (NL). Factors controlling the interactions of the genome with the NL have …

Pharmacoepigenomics: A key determinant in resolving epigenomic parameters in pathogenesis and treatment response in complex diseases

M Banerjee - Pharmacogenomics, 2022 - Taylor & Francis
Pharmacoepigenomics is an emerging tool which complements pharmacogenetics in
personalized treatment. While pharmacogenetics refers to genetic variation in …