A survey of map** algorithms in the long-reads era
It has been over a decade since the first publication of a method dedicated entirely to
map** long-reads. The distinctive characteristics of long reads resulted in methods …
map** long-reads. The distinctive characteristics of long reads resulted in methods …
Genpip: In-memory acceleration of genome analysis via tight integration of basecalling and read map**
Nanopore sequencing is a widely-used high-throughput genome sequencing technology
that can sequence long fragments of a genome into raw electrical signals at low cost …
that can sequence long fragments of a genome into raw electrical signals at low cost …
Entropy predicts sensitivity of pseudorandom seeds
Seed design is important for sequence similarity search applications such as read map**
and average nucleotide identity (ANI) estimation. Although k-mers and spaced k-mers are …
and average nucleotide identity (ANI) estimation. Although k-mers and spaced k-mers are …
An In-Memory Architecture for High-Performance Long-Read Pre-Alignment Filtering
T Shahroodi, M Miao, J Lindegger, S Wong… - ar** alignments between reference genomes
AirLift is the first read remap** tool that enables users to quickly and comprehensively
map a read set, that had been previously mapped to one reference genome, to another …
map a read set, that had been previously mapped to one reference genome, to another …