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A survey on algorithms to characterize transcription factor binding sites
Transcription factors (TFs) are key regulatory proteins that control the transcriptional rate of
cells by binding short DNA sequences called transcription factor binding sites (TFBS) or …
cells by binding short DNA sequences called transcription factor binding sites (TFBS) or …
The 2022 Nucleic Acids Research database issue and the online molecular biology database collection
DJ Rigden, XM Fernández - Nucleic acids research, 2022 - academic.oup.com
Abstract The 2022 Nucleic Acids Research Database Issue contains 185 papers, including
87 papers reporting on new databases and 85 updates from resources previously published …
87 papers reporting on new databases and 85 updates from resources previously published …
Towards a better understanding of TF-DNA binding prediction from genomic features
Z Wang, M Gong, Y Liu, S **ong, M Wang… - Computers in biology …, 2022 - Elsevier
Transcription factors (TFs) can regulate gene expression by recognizing specific cis-
regulatory elements in DNA sequences. TF-DNA binding prediction has become a …
regulatory elements in DNA sequences. TF-DNA binding prediction has become a …
RBPWorld for exploring functions and disease associations of RNA-binding proteins across species
RNA-binding proteins (RBPs) play key roles in a wide range of physiological and
pathological processes. To facilitate the investigation of RBP functions and disease …
pathological processes. To facilitate the investigation of RBP functions and disease …
TFSyntax: a database of transcription factors binding syntax in mammalian genomes
Y Zhao - Nucleic Acids Research, 2023 - academic.oup.com
In mammals, transcriptional factors (TFs) drive gene expression by binding to regulatory
elements in a cooperative manner. Deciphering the rules of such cooperation is crucial to …
elements in a cooperative manner. Deciphering the rules of such cooperation is crucial to …
Molecular mechanisms of multi-omic regulation in breast cancer
Breast cancer is a complex disease that is influenced by the concurrent influence of multiple
genetic and environmental factors. Recent advances in genomics and other high throughput …
genetic and environmental factors. Recent advances in genomics and other high throughput …
Transcription Factor-Wide Association Studies to Identify Functional SNPs in Alzheimer's Disease
Alzheimer's disease (AD) is a progressive neurodegenerative disorder with profound global
impact. While genome-wide association studies (GWAS) have revealed genomic variants …
impact. While genome-wide association studies (GWAS) have revealed genomic variants …
Molecular regulation of PPARγ/RXRα signaling by the novel cofactor ZFP407
A Charrier, J Ockunzzi, L Main, SV Ghanta… - Plos one, 2024 - journals.plos.org
Cofactors interacting with PPARγ can regulate adipogenesis and adipocyte metabolism by
modulating the transcriptional activity and selectivity of PPARγ signaling. ZFP407 was …
modulating the transcriptional activity and selectivity of PPARγ signaling. ZFP407 was …
Genomic transcription factor binding site selection is edited by the chromatin remodeling factor CHD4
M Saotome, DB Poduval, SA Grimm… - Nucleic acids …, 2024 - academic.oup.com
Biologically precise enhancer licensing by lineage-determining transcription factors enables
activation of transcripts appropriate to biological demand and prevents deleterious gene …
activation of transcripts appropriate to biological demand and prevents deleterious gene …
[HTML][HTML] Enrichment of Cis-Acting Regulatory Elements in Differentially Methylated Regions Following Lipopolysaccharide Treatment of Bovine Endometrial Epithelial …
N Jhamat, Y Guo, J Han, P Humblot… - International Journal of …, 2024 - mdpi.com
Endometritis is an inflammatory disease that negatively influences fertility and is common in
milk-producing cows. An in vitro model for bovine endometrial inflammation was used to …
milk-producing cows. An in vitro model for bovine endometrial inflammation was used to …