Next-generation sequencing: insights to advance clinical investigations of the microbiome

CR Wensel, JL Pluznick, SL Salzberg… - The Journal of clinical …, 2022 - Am Soc Clin Investig
Next-generation sequencing (NGS) technology has advanced our understanding of the
human microbiome by allowing for the discovery and characterization of unculturable …

Linking plant secondary metabolites and plant microbiomes: a review

Z Pang, J Chen, T Wang, C Gao, Z Li, L Guo… - Frontiers in plant …, 2021 - frontiersin.org
Plant secondary metabolites (PSMs) play many roles including defense against pathogens,
pests, and herbivores; response to environmental stresses, and mediating organismal …

[HTML][HTML] Tumor-resident intracellular microbiota promotes metastatic colonization in breast cancer

A Fu, B Yao, T Dong, Y Chen, J Yao, Y Liu, H Li, H Bai… - Cell, 2022 - cell.com
Tumor-resident intracellular microbiota is an emerging tumor component that has been
documented for a variety of cancer types with unclear biological functions. Here, we …

Sangerbox: A comprehensive, interaction‐friendly clinical bioinformatics analysis platform

W Shen, Z Song, X Zhong, M Huang, D Shen, P Gao… - Imeta, 2022 - Wiley Online Library
In recent decades, with the continuous development of high‐throughput sequencing
technology, data volume in medical research has increased, at the same time, almost all …

ImageGP: An easy‐to‐use data visualization web server for scientific researchers

T Chen, YX Liu, L Huang - Imeta, 2022 - Wiley Online Library
Data visualization plays a crucial role in illustrating results and sharing knowledge among
researchers. Though many types of visualization tools are widely used, most of them require …

Understanding the gut microbiota and sarcopenia: a systematic review

C Liu, WH Cheung, J Li, SKH Chow… - Journal of cachexia …, 2021 - Wiley Online Library
Background Gut microbiota dysbiosis and sarcopenia commonly occur in the elderly.
Although the concept of the gut–muscle axis has been raised, the casual relationship is still …

The root microbiome: Community assembly and its contributions to plant fitness

B Bai, W Liu, X Qiu, J Zhang, J Zhang… - Journal of Integrative …, 2022 - Wiley Online Library
The root microbiome refers to the community of microbes living in association with a plant's
roots, and includes mutualists, pathogens, and commensals. Here we focus on recent …

EVenn: Easy to create repeatable and editable Venn diagrams and Venn networks online

T Chen, H Zhang, Y Liu, YX Liu… - Journal of genetics …, 2021 - pubmed.ncbi.nlm.nih.gov
EVenn: Easy to create repeatable and editable Venn diagrams and Venn networks online
EVenn: Easy to create repeatable and editable Venn diagrams and Venn networks online J …

[HTML][HTML] Gut microbiome is associated with the clinical response to anti-PD-1 based immunotherapy in hepatobiliary cancers

J Mao, D Wang, J Long, X Yang, J Lin… - … for Immunotherapy of …, 2021 - ncbi.nlm.nih.gov
Background The gut microbiome is associated with the response to immunotherapy for
different cancers. However, the impact of the gut microbiome on hepatobiliary cancers …

ggClusterNet: An R package for microbiome network analysis and modularity‐based multiple network layouts

T Wen, P **e, S Yang, G Niu, X Liu, Z Ding, C Xue… - Imeta, 2022 - Wiley Online Library
The network analysis has attracted increasing attention and interest from ecological
academics, thus it is of great necessity to develop more convenient and powerful tools. For …