Mycobiome diversity: high-throughput sequencing and identification of fungi
Fungi are major ecological players in both terrestrial and aquatic environments by cycling
organic matter and channelling nutrients across trophic levels. High-throughput sequencing …
organic matter and channelling nutrients across trophic levels. High-throughput sequencing …
[HTML][HTML] Environmental DNA metabarcoding for benthic monitoring: A review of sediment sampling and DNA extraction methods
Environmental DNA (eDNA) metabarcoding (parallel sequencing of DNA/RNA for
identification of whole communities within a targeted group) is revolutionizing the field of …
identification of whole communities within a targeted group) is revolutionizing the field of …
Fungi in aquatic ecosystems
Fungi are phylogenetically and functionally diverse ubiquitous components of almost all
ecosystems on Earth, including aquatic environments stretching from high montane lakes …
ecosystems on Earth, including aquatic environments stretching from high montane lakes …
Microplastics alter composition of fungal communities in aquatic ecosystems
MT Kettner, K Rojas‐Jimenez… - Environmental …, 2017 - Wiley Online Library
Despite increasing concerns about microplastic (MP) pollution in aquatic ecosystems, there
is insufficient knowledge on how MP affect fungal communities. In this study, we explored …
is insufficient knowledge on how MP affect fungal communities. In this study, we explored …
Seasonality of parasitic and saprotrophic zoosporic fungi: linking sequence data to ecological traits
S Van den Wyngaert, L Ganzert, K Seto… - The ISME …, 2022 - academic.oup.com
Zoosporic fungi of the phylum Chytridiomycota (chytrids) regularly dominate pelagic fungal
communities in freshwater and marine environments. Their lifestyles range from obligate …
communities in freshwater and marine environments. Their lifestyles range from obligate …
PCR and omics based techniques to study the diversity, ecology and biology of anaerobic fungi: insights, challenges and opportunities
Anaerobic fungi (phylum Neocallimastigomycota) are common inhabitants of the digestive
tract of mammalian herbivores, and in the rumen, can account for up to 20% of the microbial …
tract of mammalian herbivores, and in the rumen, can account for up to 20% of the microbial …
Long‐read DNA metabarcoding of ribosomal RNA in the analysis of fungi from aquatic environments
DNA metabarcoding is widely used to study prokaryotic and eukaryotic microbial diversity.
Technological constraints limit most studies to marker lengths below 600 base pairs (bp) …
Technological constraints limit most studies to marker lengths below 600 base pairs (bp) …
Introducing ribosomal tandem repeat barcoding for fungi
Sequence comparison and analysis of the various ribosomal genetic markers are the
dominant molecular methods for identification and description of fungi. However, new …
dominant molecular methods for identification and description of fungi. However, new …
Interactive effects on organic matter processing from soils to the ocean: are priming effects relevant in aquatic ecosystems?
Organic matter (OM) is degraded during transport from soils to oceans. However, there are
spatial and temporal variabilities along the aquatic continuum, which hamper the …
spatial and temporal variabilities along the aquatic continuum, which hamper the …
Fungal and bacterial diversity of Svalbard subglacial ice
L Perini, C Gostinčar, N Gunde-Cimerman - Scientific reports, 2019 - nature.com
The composition of fungal and bacterial communities in three polythermal glaciers and
associated aquatic environments in Kongsfjorden, Svalbard was analysed using a …
associated aquatic environments in Kongsfjorden, Svalbard was analysed using a …