Catalytic DNA: scope, applications, and biochemistry of deoxyribozymes

SK Silverman - Trends in biochemical sciences, 2016 - cell.com
The discovery of natural RNA enzymes (ribozymes) prompted the pursuit of artificial DNA
enzymes (deoxyribozymes) by in vitro selection methods. A key motivation is the conceptual …

Boolean logic gate based on DNA strand displacement for biosensing: current and emerging strategies

S Zhao, L Yu, S Yang, X Tang, K Chang… - Nanoscale horizons, 2021 - pubs.rsc.org
DNA computers are considered one of the most prominent next-generation molecular
computers that perform Boolean logic using DNA elements. DNA-based Boolean logic …

Entropy-driven DNA logic circuits regulated by DNAzyme

J Yang, R Wu, Y Li, Z Wang, L Pan… - Nucleic Acids …, 2018 - academic.oup.com
The catalytic DNA circuits play a critical role in engineered biological systems and molecular
information processing. Actually, some of the natural or synthetic DNA circuits were triggered …

Catalytic hairpin assembly actuated DNA nanotweezer for logic gate building and sensitive enzyme-free biosensing of microRNAs

D Li, W Cheng, Y Li, YJ Xu, X Li, Y Yin, H Ju… - Analytical …, 2016 - ACS Publications
A target-switched DNA nanotweezer is designed for AND logic gate operation and enzyme-
free detection of microRNAs (miRNAs) by catalytic hairpin assembly (CHA) and proximity …

Supervised learning in adaptive DNA strand displacement networks

MR Lakin, D Stefanovic - ACS synthetic biology, 2016 - ACS Publications
The development of engineered biochemical circuits that exhibit adaptive behavior is a key
goal of synthetic biology and molecular computing. Such circuits could be used for long-term …

Bridging the two worlds: a universal interface between enzymatic and DNA computing systems

S Mailloux, YV Gerasimova, N Guz… - Angewandte …, 2015 - Wiley Online Library
Molecular computing based on enzymes or nucleic acids has attracted a great deal of
attention due to the perspectives of controlling living systems in the way we control …

Antibody-controlled actuation of DNA-based molecular circuits

W Engelen, LHH Meijer, B Somers… - Nature …, 2017 - nature.com
DNA-based molecular circuits allow autonomous signal processing, but their actuation has
relied mostly on RNA/DNA-based inputs, limiting their application in synthetic biology …

[КНИГА][B] DNA-and RNA-based Computing Systems

E Katz - 2020 - books.google.com
Discover the science of biocomputing with this comprehensive and forward-looking new
resource DNA-and RNA-Based Computing Systems delivers an authoritative overview of …

Allosteric DNAzyme-based DNA logic circuit: Operations and dynamic analysis

X Zheng, J Yang, C Zhou, C Zhang… - Nucleic acids …, 2019 - academic.oup.com
Recently, due to the dual roles of DNA and enzyme, DNAzyme has been widely used in the
field of DNA circuit, which has a wide range of applications in bio-engineered system …

A survey of advancements in nucleic acid-based logic gates and computing for applications in biotechnology and biomedicine

C Wu, S Wan, W Hou, L Zhang, J Xu, C Cui… - Chemical …, 2015 - pubs.rsc.org
Nucleic acid-based logic devices were first introduced in 1994. Since then, science has
seen the emergence of new logic systems for mimicking mathematical functions, diagnosing …