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The Mediator complex as a master regulator of transcription by RNA polymerase II
WF Richter, S Nayak, J Iwasa, DJ Taatjes - Nature Reviews Molecular …, 2022 - nature.com
The Mediator complex, which in humans is 1.4 MDa in size and includes 26 subunits,
controls many aspects of RNA polymerase II (Pol II) function. Apart from its size, a defining …
controls many aspects of RNA polymerase II (Pol II) function. Apart from its size, a defining …
Regulatory landscape of enhancer-mediated transcriptional activation
K Kawasaki, T Fukaya - Trends in Cell Biology, 2024 - cell.com
Enhancers are noncoding regulatory elements that instruct spatial and temporal specificity of
gene transcription in response to a variety of intrinsic and extrinsic signals during …
gene transcription in response to a variety of intrinsic and extrinsic signals during …
Single-cell nascent RNA sequencing unveils coordinated global transcription
Transcription is the primary regulatory step in gene expression. Divergent transcription
initiation from promoters and enhancers produces stable RNAs from genes and unstable …
initiation from promoters and enhancers produces stable RNAs from genes and unstable …
The Polycomb system sustains promoters in a deep OFF state by limiting pre-initiation complex formation to counteract transcription
The Polycomb system has fundamental roles in regulating gene expression during
mammalian development. However, how it controls transcription to enable gene repression …
mammalian development. However, how it controls transcription to enable gene repression …
Transcription factor exchange enables prolonged transcriptional bursts
W Pomp, JVW Meeussen, TL Lenstra - Molecular Cell, 2024 - cell.com
Single-molecule imaging inside living cells has revealed that transcription factors (TFs) bind
to DNA transiently, but a long-standing question is how this transient binding is related to …
to DNA transiently, but a long-standing question is how this transient binding is related to …
The miR-430 locus with extreme promoter density forms a transcription body during the minor wave of zygotic genome activation
Y Hadzhiev, L Wheatley, L Cooper, F Ansaloni… - Developmental cell, 2023 - cell.com
In anamniote embryos, the major wave of zygotic genome activation starts during the mid-
blastula transition. However, some genes escape global genome repression, are activated …
blastula transition. However, some genes escape global genome repression, are activated …
Transcriptional bursting: stochasticity in deterministic development
EA Leyes Porello, RT Trudeau, B Lim - Development, 2023 - journals.biologists.com
The transcription of DNA by RNA polymerase occurs as a discontinuous process described
as transcriptional bursting. This bursting behavior is observed across species and has been …
as transcriptional bursting. This bursting behavior is observed across species and has been …
Genome-wide inference reveals that feedback regulations constrain promoter-dependent transcriptional burst kinetics
S Luo, Z Wang, Z Zhang, T Zhou… - Nucleic Acids …, 2023 - academic.oup.com
Gene expression in mammalian cells is highly variable and episodic, resulting in a series of
discontinuous bursts of mRNAs. A challenge is to understand how static promoter …
discontinuous bursts of mRNAs. A challenge is to understand how static promoter …
The control of transcriptional memory by stable mitotic bookmarking
M Bellec, J Dufourt, G Hunt, H Lenden-Hasse… - Nature …, 2022 - nature.com
To maintain cellular identities during development, gene expression profiles must be
faithfully propagated through cell generations. The reestablishment of gene expression …
faithfully propagated through cell generations. The reestablishment of gene expression …
BurstDECONV: a signal deconvolution method to uncover mechanisms of transcriptional bursting in live cells
Monitoring transcription in living cells gives access to the dynamics of this complex
fundamental process. It reveals that transcription is discontinuous, whereby active periods …
fundamental process. It reveals that transcription is discontinuous, whereby active periods …