The Mediator complex as a master regulator of transcription by RNA polymerase II

WF Richter, S Nayak, J Iwasa, DJ Taatjes - Nature Reviews Molecular …, 2022 - nature.com
The Mediator complex, which in humans is 1.4 MDa in size and includes 26 subunits,
controls many aspects of RNA polymerase II (Pol II) function. Apart from its size, a defining …

Regulatory landscape of enhancer-mediated transcriptional activation

K Kawasaki, T Fukaya - Trends in Cell Biology, 2024 - cell.com
Enhancers are noncoding regulatory elements that instruct spatial and temporal specificity of
gene transcription in response to a variety of intrinsic and extrinsic signals during …

Single-cell nascent RNA sequencing unveils coordinated global transcription

DB Mahat, ND Tippens, JD Martin-Rufino, SK Waterton… - Nature, 2024 - nature.com
Transcription is the primary regulatory step in gene expression. Divergent transcription
initiation from promoters and enhancers produces stable RNAs from genes and unstable …

The Polycomb system sustains promoters in a deep OFF state by limiting pre-initiation complex formation to counteract transcription

AT Szczurek, E Dimitrova, JR Kelley… - Nature Cell …, 2024 - nature.com
The Polycomb system has fundamental roles in regulating gene expression during
mammalian development. However, how it controls transcription to enable gene repression …

Transcription factor exchange enables prolonged transcriptional bursts

W Pomp, JVW Meeussen, TL Lenstra - Molecular Cell, 2024 - cell.com
Single-molecule imaging inside living cells has revealed that transcription factors (TFs) bind
to DNA transiently, but a long-standing question is how this transient binding is related to …

The miR-430 locus with extreme promoter density forms a transcription body during the minor wave of zygotic genome activation

Y Hadzhiev, L Wheatley, L Cooper, F Ansaloni… - Developmental cell, 2023 - cell.com
In anamniote embryos, the major wave of zygotic genome activation starts during the mid-
blastula transition. However, some genes escape global genome repression, are activated …

Transcriptional bursting: stochasticity in deterministic development

EA Leyes Porello, RT Trudeau, B Lim - Development, 2023 - journals.biologists.com
The transcription of DNA by RNA polymerase occurs as a discontinuous process described
as transcriptional bursting. This bursting behavior is observed across species and has been …

Genome-wide inference reveals that feedback regulations constrain promoter-dependent transcriptional burst kinetics

S Luo, Z Wang, Z Zhang, T Zhou… - Nucleic Acids …, 2023 - academic.oup.com
Gene expression in mammalian cells is highly variable and episodic, resulting in a series of
discontinuous bursts of mRNAs. A challenge is to understand how static promoter …

The control of transcriptional memory by stable mitotic bookmarking

M Bellec, J Dufourt, G Hunt, H Lenden-Hasse… - Nature …, 2022 - nature.com
To maintain cellular identities during development, gene expression profiles must be
faithfully propagated through cell generations. The reestablishment of gene expression …

BurstDECONV: a signal deconvolution method to uncover mechanisms of transcriptional bursting in live cells

M Douaihy, R Topno, M Lagha, E Bertrand… - Nucleic Acids …, 2023 - academic.oup.com
Monitoring transcription in living cells gives access to the dynamics of this complex
fundamental process. It reveals that transcription is discontinuous, whereby active periods …