Next-generation hybridization and introgression

AD Twyford, RA Ennos - Heredity, 2012 - nature.com
Hybridization has a major role in evolution—from the introgression of important phenotypic
traits between species, to the creation of new species through hybrid speciation. Molecular …

Ecological Roles and Biological Activities of Specialized Metabolites from the Genus Nicotiana

AR Jassbi, S Zare, M Asadollahi… - Chemical …, 2017 - ACS Publications
Species of Nicotiana grow naturally in different parts of the world and have long been used
both medicinally and recreationally by human societies. More recently in our history …

High-quality chromosome-level genome assembly of Nicotiana benthamiana

SR Ko, S Lee, H Koo, H Seo, J Yu, YM Kim, SY Kwon… - Scientific Data, 2024 - nature.com
Nicotiana benthamiana is a fundamental model organism in plant research. Recent
advancements in genomic sequencing have revealed significant intraspecific genetic …

Genomic repeat abundances contain phylogenetic signal

S Dodsworth, MW Chase, LJ Kelly, IJ Leitch… - Systematic …, 2015 - academic.oup.com
A large proportion of genomic information, particularly repetitive elements, is usually ignored
when researchers are using next-generation sequencing. Here we demonstrate the …

An improved Nicotiana benthamiana bioproduction chassis provides novel insights into nicotine biosynthesis

K Vollheyde, QM Dudley, T Yang, MT Oz… - New …, 2023 - Wiley Online Library
The model plant Nicotiana benthamiana is an increasingly attractive organism for the
production of high‐value, biologically active molecules. However, N. benthamiana …

Time-calibrated phylogenetic trees establish a lag between polyploidisation and diversification in Nicotiana (Solanaceae)

JJ Clarkson, S Dodsworth, MW Chase - Plant Systematics and Evolution, 2017 - Springer
We investigate the timing of diversification in allopolyploids of Nicotiana (Solanaceae)
utilising sequence data of maternal and paternal origin to look for evidence of a lag phase …

Phylogeny of the Genus Chrysanthemum L.: Evidence from Single-Copy Nuclear Gene and Chloroplast DNA Sequences

PL Liu, Q Wan, YP Guo, J Yang, GY Rao - PloS one, 2012 - journals.plos.org
Chrysanthemum L.(Asteraceae-Anthemideae) is a genus with rapid speciation. It comprises
about 40 species, most of which are distributed in East Asia. Many of these are narrowly …

Phylogenetic relationships within Orchidaceae based on a low-copy nuclear coding gene, Xdh: Congruence with organellar and nuclear ribosomal DNA results

M Górniak, O Paun, MW Chase - Molecular Phylogenetics and Evolution, 2010 - Elsevier
Using parsimony and Bayesian analyses, we estimated higher-level relationships within
Orchidaceae, focusing on subfamilies and tribes. DNA sequences of part of the low-copy …

Phylogeny of Curcuma (Zingiberaceae) based on plastid and nuclear sequences: Proposal of the new subgenus Ecomata

E Záveská, T Fér, O Šída, K Krak, K Marhold… - Taxon, 2012 - Wiley Online Library
Curcuma comprises 120 species that occur throughout tropical and subtropical Asia. The
taxonomy of the genus is haunted by polyploid speciation and homoploid hybridization …

Genome-wide identification of the N6-methyladenosine regulatory genes reveals NtFIP37B increases drought resistance of tobacco (Nicotiana tabacum L.)

H Su, L Meng, Z Qu, W Zhang, N Liu, P Cao, J ** - BMC Plant Biology, 2024 - Springer
Abstract Background N 6-methyladenosine (m6A) is one of the common internal RNA
modifications found in eukaryotes. The m6A modification can regulate various biological …