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[HTML][HTML] Profiling of protein interaction networks of protein complexes using affinity purification and quantitative mass spectrometry
RM Kaake, X Wang, L Huang - Molecular & cellular proteomics, 2010 - Elsevier
Protein-protein interactions are important for nearly all biological processes, and it is known
that aberrant protein-protein interactions can lead to human disease and cancer. Recent …
that aberrant protein-protein interactions can lead to human disease and cancer. Recent …
Computational and informatics strategies for identification of specific protein interaction partners in affinity purification mass spectrometry experiments
AI Nesvizhskii - Proteomics, 2012 - Wiley Online Library
Analysis of protein interaction networks and protein complexes using affinity purification and
mass spectrometry (AP/MS) is among most commonly used and successful applications of …
mass spectrometry (AP/MS) is among most commonly used and successful applications of …
Refinements to label free proteome quantitation: how to deal with peptides shared by multiple proteins
Quantitative shotgun proteomics is dependent on the detection, identification, and
quantitative analysis of peptides. An issue arises with peptides that are shared between …
quantitative analysis of peptides. An issue arises with peptides that are shared between …
Combinatorial depletion analysis to assemble the network architecture of the SAGA and ADA chromatin remodeling complexes
Despite the availability of several large‐scale proteomics studies aiming to identify protein
interactions on a global scale, little is known about how proteins interact and are organized …
interactions on a global scale, little is known about how proteins interact and are organized …
Cryo-EM structure of the Saccharomyces cerevisiae Rpd3L histone deacetylase complex
AB Patel, J Qing, KH Tam, S Zaman, M Luiso… - Nature …, 2023 - nature.com
The Rpd3L histone deacetylase (HDAC) complex is an ancient 12-subunit complex
conserved in a broad range of eukaryotes that performs localized deacetylation at or near …
conserved in a broad range of eukaryotes that performs localized deacetylation at or near …
[HTML][HTML] Highly reproducible label free quantitative proteomic analysis of RNA polymerase complexes
The use of quantitative proteomics methods to study protein complexes has the potential to
provide in-depth information on the abundance of different protein components as well as …
provide in-depth information on the abundance of different protein components as well as …
Rpd3L HDAC links H3K4me3 to transcriptional repression memory
Transcriptional memory is critical for the faster reactivation of necessary genes upon
environmental changes and requires that the genes were previously in an active state …
environmental changes and requires that the genes were previously in an active state …
The Fng3 ING protein regulates H3 acetylation and H4 deacetylation by interacting with two distinct histone‐modifying complexes
The steady‐state level of histone acetylation is maintained by histone acetyltransferase
(HAT) and histone deacetylase (HDAC) complexes. INhibitor of Growth (ING) proteins are …
(HAT) and histone deacetylase (HDAC) complexes. INhibitor of Growth (ING) proteins are …
[HTML][HTML] Proteomic approaches to the study of papillomavirus–host interactions
The identification of interactions between viral and host cellular proteins has provided major
insights into papillomavirus research, and these interactions are especially relevant to the …
insights into papillomavirus research, and these interactions are especially relevant to the …
[HTML][HTML] Exploring the yeast acetylome using functional genomics
Lysine acetylation is a dynamic posttranslational modification with a well-defined role in
regulating histones. The impact of acetylation on other cellular functions remains relatively …
regulating histones. The impact of acetylation on other cellular functions remains relatively …