A Bayesian framework for inferring dynamic intercellular interactions from time-series single-cell data

C Park, S Mani, N Beltran-Velez, K Maurer… - Genome …, 2024 - genome.cshlp.org
Characterizing cell–cell communication and tracking its variability over time are crucial for
understanding the coordination of biological processes mediating normal development …

Coordinated immune networks in leukemia bone marrow microenvironments distinguish response to cellular therapy

K Maurer, CY Park, S Mani, M Borji, F Raths… - Science …, 2025 - science.org
Understanding how intratumoral immune populations coordinate antitumor responses after
therapy can guide treatment prioritization. We systematically analyzed an established …

Infinite-fidelity coregionalization for physical simulation

S Li, Z Wang, R Kirby, S Zhe - Advances in Neural …, 2022 - proceedings.neurips.cc
Multi-fidelity modeling and learning is important in physical simulation related applications. It
can leverage both low-fidelity and high-fidelity examples for training so as to reduce the cost …

Multi-Resolution Active Learning of Fourier Neural Operators

S Li, X Yu, W **ng, R Kirby… - International …, 2024 - proceedings.mlr.press
Abstract Fourier Neural Operator (FNO) is a popular operator learning framework. It not only
achieves the state-of-the-art performance in many tasks, but also is efficient in training and …

DIISCO: A Bayesian framework for inferring dynamic intercellular interactions from time-series single-cell data

C Park, S Mani, N Beltran-Velez, K Maurer… - … on Research in …, 2024 - Springer
Characterizing cell-cell communication and tracking its variability over time is essential for
understanding the coordination of biological processes mediating normal development …

Bayesian inference of structured latent spaces from neural population activity with the orthogonal stochastic linear mixing model

R Meng, KE Bouchard - PLOS Computational Biology, 2024 - journals.plos.org
The brain produces diverse functions, from perceiving sounds to producing arm reaches,
through the collective activity of populations of many neurons. Determining if and how the …

Bayesian Inference in High-Dimensional Time-Serieswith the Orthogonal Stochastic Linear Mixing Model

R Meng, K Bouchard - arxiv preprint arxiv:2106.13379, 2021 - arxiv.org
Many modern time-series datasets contain large numbers of output response variables
sampled for prolonged periods of time. For example, in neuroscience, the activities of 100s …

[PDF][PDF] Stochastic Collapsed Variational Inference for Structured Gaussian Process Regression Networks

R Meng, HKH Lee, K Bouchard - Conference of the International …, 2022 - library.oapen.org
This paper presents an efficient variational inference framework for a family of structured
Gaussian process regression network (SGPRN) models. We incorporate auxiliary inducing …

Bayesian methods in tensor analysis

Y Shi, W Shen - arxiv preprint arxiv:2302.05978, 2023 - arxiv.org
Tensors, also known as multidimensional arrays, are useful data structures in machine
learning and statistics. In recent years, Bayesian methods have emerged as a popular …

Efficient Probabilistic Learning and Optimization for Physical Simulations

S Li - 2024 - search.proquest.com
Computational physics is an interdisciplinary field that involves physics, mathematics, and
computer science. The main goal is to devise computational techniques to tackle various …