SynthSeg: Segmentation of brain MRI scans of any contrast and resolution without retraining

B Billot, DN Greve, O Puonti, A Thielscher… - Medical image …, 2023 - Elsevier
Despite advances in data augmentation and transfer learning, convolutional neural
networks (CNNs) difficultly generalise to unseen domains. When segmenting brain scans …

Robust machine learning segmentation for large-scale analysis of heterogeneous clinical brain MRI datasets

B Billot, C Magdamo, Y Cheng, SE Arnold… - Proceedings of the …, 2023 - pnas.org
Every year, millions of brain MRI scans are acquired in hospitals, which is a figure
considerably larger than the size of any research dataset. Therefore, the ability to analyze …

[HTML][HTML] Data synthesis and adversarial networks: A review and meta-analysis in cancer imaging

R Osuala, K Kushibar, L Garrucho, A Linardos… - Medical Image …, 2023 - Elsevier
Despite technological and medical advances, the detection, interpretation, and treatment of
cancer based on imaging data continue to pose significant challenges. These include inter …

[HTML][HTML] TorchIO: a Python library for efficient loading, preprocessing, augmentation and patch-based sampling of medical images in deep learning

F Pérez-García, R Sparks, S Ourselin - Computer methods and programs in …, 2021 - Elsevier
Background and ObjectiveProcessing of medical images such as MRI or CT presents
different challenges compared to RGB images typically used in computer vision. These …

Challenges for machine learning in clinical translation of big data imaging studies

NK Dinsdale, E Bluemke, V Sundaresan, M Jenkinson… - Neuron, 2022 - cell.com
Combining deep learning image analysis methods and large-scale imaging datasets offers
many opportunities to neuroscience imaging and epidemiology. However, despite these …

Quantitative brain morphometry of portable low-field-strength MRI using super-resolution machine learning

JE Iglesias, R Schleicher, S Laguna, B Billot… - Radiology, 2022 - pubs.rsna.org
Background Portable, low-field-strength (0.064-T) MRI has the potential to transform
neuroimaging but is limited by low spatial resolution and low signal-to-noise ratio. Purpose …

FastSurferVINN: Building resolution-independence into deep learning segmentation methods—A solution for HighRes brain MRI

L Henschel, D Kügler, M Reuter - NeuroImage, 2022 - Elsevier
Leading neuroimaging studies have pushed 3T MRI acquisition resolutions below 1.0 mm
for improved structure definition and morphometry. Yet, only few, time-intensive automated …

[HTML][HTML] Towards contrast-agnostic soft segmentation of the spinal cord

S Bédard, EN Karthik, C Tsagkas, E Pravatà… - Medical Image …, 2025 - Elsevier
Spinal cord segmentation is clinically relevant and is notably used to compute spinal cord
cross-sectional area (CSA) for the diagnosis and monitoring of cord compression or …

[HTML][HTML] A web-based automated image processing research platform for cochlear implantation-related studies

J Margeta, R Hussain, P López Diez… - Journal of clinical …, 2022 - mdpi.com
The robust delineation of the cochlea and its inner structures combined with the detection of
the electrode of a cochlear implant within these structures is essential for envisaging a safer …