Proteogenomic data and resources for pan-cancer analysis

Y Li, Y Dou, FDV Leprevost, Y Geffen, AP Calinawan… - Cancer cell, 2023 - cell.com
Summary The National Cancer Institute's Clinical Proteomic Tumor Analysis Consortium
(CPTAC) investigates tumors from a proteogenomic perspective, creating rich multi-omics …

A post-genomic view of the ecophysiology, catabolism and biotechnological relevance of sulphate-reducing prokaryotes

R Rabus, SS Venceslau, L Wöhlbrand… - Advances in microbial …, 2015 - Elsevier
Dissimilatory sulphate reduction is the unifying and defining trait of sulphate-reducing
prokaryotes (SRP). In their predominant habitats, sulphate-rich marine sediments, SRP have …

[HTML][HTML] A quantitative proteome map of the human body

L Jiang, M Wang, S Lin, R Jian, X Li, J Chan, G Dong… - Cell, 2020 - cell.com
Determining protein levels in each tissue and how they compare with RNA levels is
important for understanding human biology and disease as well as regulatory processes …

Transcriptional and translational differences of microglia from male and female brains

D Guneykaya, A Ivanov, DP Hernandez, V Haage… - Cell reports, 2018 - cell.com
Sex differences in brain structure and function are of substantial scientific interest because of
sex-related susceptibility to psychiatric and neurological disorders. Neuroinflammation is a …

Gene‐specific correlation of RNA and protein levels in human cells and tissues

F Edfors, F Danielsson, BM Hallström, L Käll… - Molecular systems …, 2016 - embopress.org
An important issue for molecular biology is to establish whether transcript levels of a given
gene can be used as proxies for the corresponding protein levels. Here, we have developed …

Nitric oxide-dependent anaerobic ammonium oxidation

Z Hu, HJCT Wessels, T van Alen, MSM Jetten… - Nature …, 2019 - nature.com
Nitric oxide (NO) has important functions in biology and atmospheric chemistry as a toxin,
signaling molecule, ozone depleting agent and the precursor of the greenhouse gas nitrous …

Microglial-derived miRNA let-7 and HMGB1 contribute to ethanol-induced neurotoxicity via TLR7

LG Coleman, J Zou, FT Crews - Journal of neuroinflammation, 2017 - Springer
Background Toll-like receptor (TLR) signaling is emerging as an important component of
neurodegeneration. TLR7 senses viral RNA and certain endogenous miRNAs to initiate …

Sodium butyrate abolishes lipopolysaccharide-induced depression-like behaviors and hippocampal microglial activation in mice

Y Yamawaki, N Yoshioka, K Nozaki, H Ito, K Oda… - Brain research, 2018 - Elsevier
Patients with major depressive disorder have elevated peripheral inflammation; the degree
of this increase correlates with the severity of the disorder. Chronic psychological stress …

Digital detection of proteins

DC Duffy - Lab on a Chip, 2023 - pubs.rsc.org
This paper reviews methods for detecting proteins based on molecular digitization, ie, the
isolation and detection of single protein molecules or singulated ensembles of protein …

TDP-43-stratified single-cell proteomics of postmortem human spinal motor neurons reveals protein dynamics in amyotrophic lateral sclerosis

AJ Guise, SA Misal, R Carson, JH Chu, H Boekweg… - Cell reports, 2024 - cell.com
A limitation of conventional bulk-tissue proteome studies in amyotrophic lateral sclerosis
(ALS) is the confounding of motor neuron (MN) signals by admixed non-MN proteins. Here …