Rethinking drug design in the artificial intelligence era

P Schneider, WP Walters, AT Plowright… - Nature reviews drug …, 2020 - nature.com
Artificial intelligence (AI) tools are increasingly being applied in drug discovery. While some
protagonists point to vast opportunities potentially offered by such tools, others remain …

Industrial information integration—A literature review 2006–2015

Y Chen - Journal of industrial information integration, 2016 - Elsevier
In the last few years, Industrial Information Integration Engineering (IIIE) has attracted much
attention by the information and communications technology (ICT) community. However …

[LIBRO][B] Designing and building enterprise knowledge graphs

J Sequeda, O Lassila - 2022 - books.google.com
This book is a guide to designing and building knowledge graphs from enterprise relational
databases in practice.\It presents a principled framework centered on map** patterns to …

Big data in drug discovery

N Brown, J Cambruzzi, PJ Cox, M Davies… - Progress in medicinal …, 2018 - Elsevier
Abstract Interpretation of Big Data in the drug discovery community should enhance project
timelines and reduce clinical attrition through improved early decision making. The issues …

Evolving BioAssay Ontology (BAO): modularization, integration and applications

S Abeyruwan, UD Vempati, H Küçük-McGinty… - Journal of biomedical …, 2014 - Springer
The lack of established standards to describe and annotate biological assays and screening
outcomes in the domain of drug and chemical probe discovery is a severe limitation to utilize …

API-centric linked data integration: The open PHACTS discovery platform case study

P Groth, A Loizou, AJG Gray, C Goble, L Harland… - Journal of web …, 2014 - Elsevier
Data integration is a key challenge faced in pharmacology where there are numerous
heterogeneous databases spanning multiple domains (eg chemistry and biology). To …

Evidence-based and quantitative prioritization of tool compounds in phenotypic drug discovery

Y Wang, A Cornett, FJ King, Y Mao, F Nigsch… - Cell chemical …, 2016 - cell.com
The use of potent and selective chemical tools with well-defined targets can help elucidate
biological processes driving phenotypes in phenotypic screens. However, identification of …

Ten simple rules for selecting a bio-ontology

J Malone, R Stevens, S Jupp, T Hancocks… - PLoS computational …, 2016 - journals.plos.org
Biologists and bioinformaticians now look to ontologies or software that uses ontologies as a
means of standardising the way data are described, queried, and interpreted. Ontologies …

A pay-as-you-go methodology to design and build enterprise knowledge graphs from relational databases

JF Sequeda, WJ Briggs, DP Miranker… - The Semantic Web …, 2019 - Springer
Business users must answer business questions quickly to address Business Intelligence
(BI) needs. The bottleneck is to understand the complex databases schemas. Only few …

Construction of a knowledge graph for diabetes complications from expert-reviewed clinical evidences

L Wang, H **e, W Han, X Yang, L Shi… - Computer Assisted …, 2020 - Taylor & Francis
A knowledge graph is a structured representation of data that can express entity and
relational knowledge. More attention has been paid to the study of a clinical knowledge …