A practical guide to design and assess a phylogenomic study

J Lozano-Fernandez - Genome Biology and Evolution, 2022 - academic.oup.com
Over the last decade, molecular systematics has undergone a change of paradigm as high-
throughput sequencing now makes it possible to reconstruct evolutionary relationships …

Phylogenomic analyses highlight innovation and introgression in the continental radiations of Fagaceae across the Northern Hemisphere

BF Zhou, S Yuan, AA Crowl, YY Liang, Y Shi… - Nature …, 2022 - nature.com
Northern Hemisphere forests changed drastically in the early Eocene with the diversification
of the oak family (Fagaceae). Cooling climates over the next 20 million years fostered the …

A molecular timescale for eukaryote evolution with implications for the origin of red algal-derived plastids

JFH Strassert, I Irisarri, TA Williams, F Burki - Nature Communications, 2021 - nature.com
In modern oceans, eukaryotic phytoplankton is dominated by lineages with red algal-derived
plastids such as diatoms, dinoflagellates, and coccolithophores. Despite the ecological …

The promise and pitfalls of synteny in phylogenomics

JL Steenwyk, N King - Plos Biology, 2024 - journals.plos.org
Reconstructing the tree of life remains a central goal in biology. Early methods, which relied
on small numbers of morphological or genetic characters, often yielded conflicting …

Phylogenomic resolution of the cetacean tree of life using target sequence capture

MR McGowen, G Tsagkogeorga… - Systematic …, 2020 - academic.oup.com
The evolution of cetaceans, from their early transition to an aquatic lifestyle to their
subsequent diversification, has been the subject of numerous studies. However, although …

Earth history and the passerine superradiation

CH Oliveros, DJ Field, DT Ksepka… - Proceedings of the …, 2019 - National Acad Sciences
Avian diversification has been influenced by global climate change, plate tectonic
movements, and mass extinction events. However, the impact of these factors on the …

Phylogenomics and the rise of the angiosperms

AR Zuntini, T Carruthers, O Maurin, PC Bailey… - Nature, 2024 - nature.com
Angiosperms are the cornerstone of most terrestrial ecosystems and human livelihoods,. A
robust understanding of angiosperm evolution is required to explain their rise to ecological …

Global Brassicaceae phylogeny based on filtering of 1,000-gene dataset

KP Hendriks, C Kiefer, IA Al-Shehbaz, CD Bailey… - Current biology, 2023 - cell.com
The mustard family (Brassicaceae) is a scientifically and economically important family,
containing the model plant Arabidopsis thaliana and numerous crop species that feed …

Phylogenomics, origin, and diversification of Anthozoans (Phylum Cnidaria)

CS McFadden, AM Quattrini, MR Brugler… - Systematic …, 2021 - academic.oup.com
Anthozoan cnidarians (corals and sea anemones) include some of the world's most
important foundation species, capable of building massive reef complexes that support …

Palaeoclimate ocean conditions shaped the evolution of corals and their skeletons through deep time

AM Quattrini, E Rodríguez, BC Faircloth… - Nature Ecology & …, 2020 - nature.com
Identifying how past environmental conditions shaped the evolution of corals and their
skeletal traits provides a framework for predicting their persistence and that of their non …