[HTML][HTML] Unified alignment of protein-protein interaction networks
Paralleling the increasing availability of protein-protein interaction (PPI) network data,
several network alignment methods have been proposed. Network alignments have been …
several network alignment methods have been proposed. Network alignments have been …
Biological relevance and therapeutic potential of the hypusine modification system
N Pällmann, M Braig, H Sievert, M Preukschas… - Journal of Biological …, 2015 - ASBMB
Hypusine modification of the eukaryotic initiation factor 5A (eIF-5A) is emerging as a crucial
regulator in cancer, infections, and inflammation. Although its contribution in translational …
regulator in cancer, infections, and inflammation. Although its contribution in translational …
Identification of crucial candidate genes and pathways in glioblastoma multiform by bioinformatics analysis
AM Alshabi, B Vastrad, IA Shaikh, C Vastrad - Biomolecules, 2019 - mdpi.com
The present study aimed to investigate the molecular mechanisms underlying glioblastoma
multiform (GBM) and its biomarkers. The differentially expressed genes (DEGs) were …
multiform (GBM) and its biomarkers. The differentially expressed genes (DEGs) were …
[HTML][HTML] Protein conformational switch discerned via network centrality properties
D Foutch, B Pham, T Shen - Computational and Structural Biotechnology …, 2021 - Elsevier
Network analysis has emerged as a powerful tool for examining structural biology systems.
The spatial organization of the components of a biomolecular structure has been rendered …
The spatial organization of the components of a biomolecular structure has been rendered …
Merging and scoring molecular interactions utilising existing community standards: tools, use-cases and a case study
The evidence that two molecules interact in a living cell is often inferred from multiple
different experiments. Experimental data is captured in multiple repositories, but there is no …
different experiments. Experimental data is captured in multiple repositories, but there is no …
Detecting protein complexes from signed protein-protein interaction networks
Identification of protein complexes is fundamental for understanding the cellular functional
organization. With the accumulation of physical protein-protein interaction (PPI) data …
organization. With the accumulation of physical protein-protein interaction (PPI) data …
Genome-wide detection and analysis of multifunctional genes
Many genes can play a role in multiple biological processes or molecular functions.
Identifying multifunctional genes at the genome-wide level and studying their properties can …
Identifying multifunctional genes at the genome-wide level and studying their properties can …
Deep learning reveals many more inter-protein residue-residue contacts than direct coupling analysis
Intra-protein residue-level contact prediction has drawn a lot of attentions in recent years
and made very good progress, but much fewer methods are dedicated to inter-protein …
and made very good progress, but much fewer methods are dedicated to inter-protein …
Exploiting locational and topological overlap model to identify modules in protein interaction networks
Background Clustering molecular network is a typical method in system biology, which is
effective in predicting protein complexes or functional modules. However, few studies have …
effective in predicting protein complexes or functional modules. However, few studies have …
Presence and utility of intrinsically disordered regions in kinases
Since aberrant cell signaling pathways underlie majority of pathophysiological morbidities,
kinase inhibitors are routinely used for pharmacotherapy. However, most kinase inhibitors …
kinase inhibitors are routinely used for pharmacotherapy. However, most kinase inhibitors …