ipyrad: Interactive assembly and analysis of RADseq datasets
Abstract Summary ipyrad is a free and open source tool for assembling and analyzing
restriction site-associated DNA sequence datasets using de novo and/or reference-based …
restriction site-associated DNA sequence datasets using de novo and/or reference-based …
A guide to carrying out a phylogenomic target sequence capture project
High-throughput DNA sequencing techniques enable time-and cost-effective sequencing of
large portions of the genome. Instead of sequencing and annotating whole genomes, many …
large portions of the genome. Instead of sequencing and annotating whole genomes, many …
Optimizing the quality of clinical studies on oral microbiome: A practical guide for planning, performing, and reporting
E Zaura, VY Pappalardo, MJ Buijs… - Periodontology …, 2021 - Wiley Online Library
With this review, we aim to increase the quality standards for clinical studies with
microbiome as an output parameter. We critically address the existing body of evidence for …
microbiome as an output parameter. We critically address the existing body of evidence for …
Standardized multi-omics of Earth's microbiomes reveals microbial and metabolite diversity
Despite advances in sequencing, lack of standardization makes comparisons across studies
challenging and hampers insights into the structure and function of microbial communities …
challenging and hampers insights into the structure and function of microbial communities …
Gut microbiome composition is predictive of incident type 2 diabetes in a population cohort of 5,572 Finnish adults
OBJECTIVE To examine the previously unknown long-term association between gut
microbiome composition and incident type 2 diabetes in a representative population cohort …
microbiome composition and incident type 2 diabetes in a representative population cohort …
Prolonged morphological expansion of spiny-rayed fishes following the end-Cretaceous
Spiny-rayed fishes (Acanthomorpha) dominate modern marine habitats and account for
more than a quarter of all living vertebrate species. Previous time-calibrated phylogenies …
more than a quarter of all living vertebrate species. Previous time-calibrated phylogenies …
A conserved interdomain microbial network underpins cadaver decomposition despite environmental variables
Microbial breakdown of organic matter is one of the most important processes on Earth, yet
the controls of decomposition are poorly understood. Here we track 36 terrestrial human …
the controls of decomposition are poorly understood. Here we track 36 terrestrial human …
Association between the gut microbiota and blood pressure in a population cohort of 6953 individuals
Background Several small‐scale animal studies have suggested that gut microbiota and
blood pressure (BP) are linked. However, results from human studies remain scarce and …
blood pressure (BP) are linked. However, results from human studies remain scarce and …
The coevolution of fungus-ant agriculture
Fungus-farming ants cultivate multiple lineages of fungi for food, but, because fungal cultivar
relationships are largely unresolved, the history of fungus-ant coevolution remains poorly …
relationships are largely unresolved, the history of fungus-ant coevolution remains poorly …
Double DAP-seq uncovered synergistic DNA binding of interacting bZIP transcription factors
Many eukaryotic transcription factors (TF) form homodimer or heterodimer complexes to
regulate gene expression. Dimerization of BASIC LEUCINE ZIPPER (bZIP) TFs are critical …
regulate gene expression. Dimerization of BASIC LEUCINE ZIPPER (bZIP) TFs are critical …