Clonal fitness inferred from time-series modelling of single-cell cancer genomes
Progress in defining genomic fitness landscapes in cancer, especially those defined by copy
number alterations (CNAs), has been impeded by lack of time-series single-cell sampling of …
number alterations (CNAs), has been impeded by lack of time-series single-cell sampling of …
Statistical inference for stochastic differential equations
Many scientific fields have experienced growth in the use of stochastic differential equations
(SDEs), also known as diffusion processes, to model scientific phenomena over time. SDEs …
(SDEs), also known as diffusion processes, to model scientific phenomena over time. SDEs …
Piecewise deterministic Markov processes for continuous-time Monte Carlo
Recently, there have been conceptually new developments in Monte Carlo methods through
the introduction of new MCMC and sequential Monte Carlo (SMC) algorithms which are …
the introduction of new MCMC and sequential Monte Carlo (SMC) algorithms which are …
Sequential quasi monte carlo
M Gerber, N Chopin - Journal of the Royal Statistical Society …, 2015 - academic.oup.com
We derive and study sequential quasi Monte Carlo (SQMC), a class of algorithms obtained
by introducing QMC point sets in particle filtering. SQMC is related to, and may be seen as …
by introducing QMC point sets in particle filtering. SQMC is related to, and may be seen as …
Exact simulation of the Wright–Fisher diffusion
PA Jenkins, D Spano - 2017 - projecteuclid.org
Abstract The Wright–Fisher family of diffusion processes is a widely used class of
evolutionary models. However, simulation is difficult because there is no known closed-form …
evolutionary models. However, simulation is difficult because there is no known closed-form …
Monte carlo fusion
In this paper we propose a new theory and methodology to tackle the problem of unifying
Monte Carlo samples from distributed densities into a single Monte Carlo draw from the …
Monte Carlo samples from distributed densities into a single Monte Carlo draw from the …
Divide-and-Conquer Fusion
Combining several (sample approximations of) distributions, which we term sub-posteriors,
into a single distribution proportional to their product, is a common challenge. Occurring, for …
into a single distribution proportional to their product, is a common challenge. Occurring, for …
-Strong simulation for multidimensional stochastic differential equations via rough path analysis
Consider a multidimensional diffusion process X={X(t):t∈0,1\}. Let ε>0 be a deterministic,
user defined, tolerance error parameter. Under standard regularity conditions on the drift …
user defined, tolerance error parameter. Under standard regularity conditions on the drift …
On unbiased score estimation for partially observed diffusions
We consider the problem of statistical inference for a class of partially-observed diffusion
processes, with discretely-observed data and finite-dimensional parameters. We construct …
processes, with discretely-observed data and finite-dimensional parameters. We construct …
[PDF][PDF] The scalable Langevin exact algorithm: Bayesian inference for big data
This paper introduces a class of Monte Carlo algorithms which are based upon simulating a
Markov process whose quasi-stationary distribution coincides with the distribution of interest …
Markov process whose quasi-stationary distribution coincides with the distribution of interest …