Use of molecular docking computational tools in drug discovery

F Stanzione, I Giangreco, JC Cole - Progress in medicinal chemistry, 2021 - Elsevier
Molecular docking has become an important component of the drug discovery process.
Since first being developed in the 1980s, advancements in the power of computer hardware …

[HTML][HTML] Macromolecular structure determination using X-rays, neutrons and electrons: recent developments in Phenix

D Liebschner, PV Afonine, ML Baker… - Biological …, 2019 - journals.iucr.org
Diffraction (X-ray, neutron and electron) and electron cryo-microscopy are powerful methods
to determine three-dimensional macromolecular structures, which are required to …

The structure assessment web server: for proteins, complexes and more

AM Waterhouse, G Studer, X Robin… - Nucleic Acids …, 2024 - academic.oup.com
The 'structure assessment'web server is a one-stop shop for interactive evaluation and
benchmarking of structural models of macromolecular complexes including proteins and …

ISOLDE: a physically realistic environment for model building into low-resolution electron-density maps

TI Croll - Biological Crystallography, 2018 - journals.iucr.org
This paper introduces ISOLDE, a new software package designed to provide an intuitive
environment for high-fidelity interactive remodelling/refinement of macromolecular models …

Real-space refinement in PHENIX for cryo-EM and crystallography

PV Afonine, BK Poon, RJ Read… - Biological …, 2018 - journals.iucr.org
This article describes the implementation of real-space refinement in the phenix.
real_space_refine program from the PHENIX suite. The use of a simplified refinement target …

Protein Data Bank: the single global archive for 3D macromolecular structure data

Nucleic acids research, 2019 - academic.oup.com
Abstract The Protein Data Bank (PDB) is the single global archive of experimentally
determined three-dimensional (3D) structure data of biological macromolecules. Since …

[HTML][HTML] New tools for the analysis and validation of cryo-EM maps and atomic models

PV Afonine, BP Klaholz, NW Moriarty… - Biological …, 2018 - journals.iucr.org
Recent advances in the field of electron cryomicroscopy (cryo-EM) have resulted in a rapidly
increasing number of atomic models of biomacromolecules that have been solved using this …

Protein Data Bank (PDB): the single global macromolecular structure archive

SK Burley, HM Berman, GJ Kleywegt… - … : methods and protocols, 2017 - Springer
Abstract The Protein Data Bank (PDB)––the single global repository of experimentally
determined 3D structures of biological macromolecules and their complexes––was …

EMDB—the electron microscopy data bank

Nucleic acids research, 2024 - academic.oup.com
Abstract The Electron Microscopy Data Bank (EMDB) is the global public archive of three-
dimensional electron microscopy (3DEM) maps of biological specimens derived from …

The RCSB protein data bank: integrative view of protein, gene and 3D structural information

PW Rose, A Prlić, A Altunkaya, C Bi… - Nucleic acids …, 2016 - academic.oup.com
Abstract The Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB
PDB, http://rcsb. org), the US data center for the global PDB archive, makes PDB data freely …