Identifiability in phylogenetics using algebraic matroids

B Hollering, S Sullivant - Journal of Symbolic Computation, 2021 - Elsevier
Identifiability is a crucial property for a statistical model since distributions in the model
uniquely determine the parameters that produce them. In phylogenetics, the identifiability of …

Computing algebraic degrees of phylogenetic varieties

LDG Puente, M Garrote-López, E Shehu - Algebraic Statistics, 2023 - msp.org
Phylogenetic varieties are algebraic varieties specified by a statistical model describing the
evolution of biological sequences along a tree. Its understanding is an important problem in …

Distinguishing level-2 phylogenetic networks using phylogenetic invariants

M Ardiyansyah - arxiv preprint arxiv:2104.12479, 2021 - arxiv.org
In phylogenetics, it is important for the phylogenetic network model parameters to be
identifiable so that the evolutionary histories of a group of species can be consistently …

Dimensions of group-based phylogenetic mixtures

H Baños, N Bushek, R Davidson, E Gross… - Bulletin of mathematical …, 2019 - Springer
Mixtures of group-based Markov models of evolution correspond to joins of toric varieties. In
this paper, we establish a large number of cases for which these phylogenetic join varieties …

Selected topics on toric varieties

M Michałek - arxiv preprint arxiv:1702.03125, 2017 - arxiv.org
arxiv:1702.03125v1 [math.AG] 10 Feb 2017 Page 1 arxiv:1702.03125v1 [math.AG] 10 Feb
2017 SELECTED TOPICS ON TORIC VARIETIES MATEUSZ MICHAŁEK 1. Introduction There …

The model-specific Markov embedding problem for symmetric group-based models

M Ardiyansyah, D Kosta, K Kubjas - Journal of Mathematical Biology, 2021 - Springer
We study model embeddability, which is a variation of the famous embedding problem in
probability theory, when apart from the requirement that the Markov matrix is the matrix …

Computing algebraic degrees of phylogenetic varieties

LD García Puente, M Garrote-López, E Shehu - Algebraic Statistics, 2024 - msp.org
Phylogenetic varieties are algebraic varieties specified by a statistical model describing the
evolution of biological sequences along a tree. Its understanding is an important problem in …

The model-specific Markov embedding problem for symmetric group-based models

A Muhammad, K Dimitra, K Kaie - Journal of Mathematical …, 2021 - search.proquest.com
We study model embeddability, which is a variation of the famous embedding problem in
probability theory, when apart from the requirement that the Markov matrix is the matrix …

Model embeddability for symmetric group-based models

M Ardiyansyah, D Kosta, K Kubjas - arxiv, 2020 - eprints.gla.ac.uk
We study model embeddability, which is a variation of the famous embedding problem in
probability theory, when apart from the requirement that the Markov matrix is the matrix …

[PDF][PDF] IDENTIFIKASI MOLEKULER BAKTERI SIMBION PADA SPONS

DPP ENGGANO, V YURISKA - repository.unsri.ac.id
Keanekaragaman biota laut sangat menjanjikan untuk dieksplorasi dan dimanfaatkan
sebagai sumber obat-obatan baru dimasa yang mendatang. Salah satu perairan Indonesia …