Survey for a Decade of Coding for DNA Storage

O Sabary, HM Kiah, PH Siegel… - IEEE Transactions on …, 2024 - ieeexplore.ieee.org
Advancements in DNA synthesis and sequencing technologies have enabled the storage of
data on synthetic DNA strands. However, realizing its potential relies on the design of …

DNA-based data storage systems: A review of implementations and code constructions

O Milenkovic, C Pan - IEEE Transactions on Communications, 2024 - ieeexplore.ieee.org
This invited review paper has the aim to acquaint the communication theory community with
the emerging topic of molecular data storage. The exposition includes an overview of basic …

[HTML][HTML] BO-DNA: Biologically optimized encoding model for a highly-reliable DNA data storage

A Rasool, J Hong, Q Jiang, H Chen, Q Qu - Computers in Biology and …, 2023 - Elsevier
DNA data storage is a promising technology that utilizes computer simulation, and synthetic
biology, offering high-density and reliable digital information storage. It is challenging to …

DNA synthesis using shortmers

M Abu-Sini, A Lenz, E Yaakobi - 2023 IEEE International …, 2023 - ieeexplore.ieee.org
In conventional DNA synthesis machines many strands are usually synthesized in parallel
by iterating through a supersequence s and adding in each cycle a single nucleotide to a …

Optimal reference for DNA synthesis

O Elishco, W Huleihel - IEEE Transactions on Information …, 2023 - ieeexplore.ieee.org
In recent years, DNA has emerged as a potentially viable storage technology. DNA
synthesis, which refers to the task of writing the data into DNA, is perhaps the most costly …

Constructions and properties of efficient DNA synthesis codes

KAS Immink, K Cai, TT Nguyen… - IEEE Transactions on …, 2024 - ieeexplore.ieee.org
We report on coding methods for efficiently synthesizing deoxyribonucleic acid (DNA) for
massive data storage, where a plurality of DNA strands are synthesized in parallel. We …

Multivariate analytic combinatorics for cost constrained channels and subsequence enumeration

A Lenz, S Melczer, C Rashtchian, PH Siegel - arxiv preprint arxiv …, 2021 - arxiv.org
Analytic combinatorics in several variables is a powerful tool for deriving the asymptotic
behavior of combinatorial quantities by analyzing multivariate generating functions. We …

On the Long-Term Behavior of k-tuples Frequencies in Mutation Systems

O Elishco - IEEE Transactions on Information Theory, 2024 - ieeexplore.ieee.org
In response to the evolving landscape of data storage, researchers have increasingly
explored non-traditional platforms, with DNA-based storage emerging as a cutting-edge …

Evaluation of the Gilbert–Varshamov bound using multivariate analytic combinatorics

G Keshav, DT Dao, HM Kiah… - 2023 IEEE International …, 2023 - ieeexplore.ieee.org
Analytic combinatorics in several variables refers to a suite of tools that provide sharp
asymptotic estimates for certain combinatorial quantities. In this paper, we apply these tools …

On DNA Synthesis Using Shortmers and the Capacity of Non-deterministic Costly Constrained Graphs

M Abu-Sini, A Lenz, E Yaakobi - IEEE Transactions on …, 2024 - ieeexplore.ieee.org
In conventional DNA synthesis machines, usually many strands are synthesized in parallel
by iterating through a supersequence s and adding in each cycle the next nucleotide to a …