Machine learning techniques for personalised medicine approaches in immune-mediated chronic inflammatory diseases: applications and challenges

J Peng, EC Jury, P Dönnes, C Ciurtin - Frontiers in pharmacology, 2021 - frontiersin.org
In the past decade, the emergence of machine learning (ML) applications has led to
significant advances towards implementation of personalised medicine approaches for …

An update on the management of childhood-onset systemic lupus erythematosus

VC Trindade, M Carneiro-Sampaio, E Bonfa, CA Silva - Pediatric Drugs, 2021 - Springer
Childhood-onset systemic lupus erythematosus (cSLE) is a prototype of a multisystemic,
inflammatory, heterogeneous autoimmune condition. This disease is characterized by …

Disease severity-specific neutrophil signatures in blood transcriptomes stratify COVID-19 patients

AC Aschenbrenner, M Mouktaroudi, B Krämer… - Genome medicine, 2021 - Springer
Abstract Background The SARS-CoV-2 pandemic is currently leading to increasing numbers
of COVID-19 patients all over the world. Clinical presentations range from asymptomatic …

Dimensionality reduction by UMAP reinforces sample heterogeneity analysis in bulk transcriptomic data

Y Yang, H Sun, Y Zhang, T Zhang, J Gong, Y Wei… - Cell reports, 2021 - cell.com
Transcriptomic analysis plays a key role in biomedical research. Linear dimensionality
reduction methods, especially principal-component analysis (PCA), are widely used in …

The pathogenesis of systemic lupus erythematosus: harnessing big data to understand the molecular basis of lupus

MD Catalina, KA Owen, AC Labonte, AC Grammer… - Journal of …, 2020 - Elsevier
Systemic lupus erythematosus (SLE) is a chronic, systemic autoimmune disease that causes
damage to multiple organ systems. Despite decades of research and available murine …

The promise of precision medicine in rheumatology

JM Guthridge, CA Wagner, JA James - Nature medicine, 2022 - nature.com
Systemic autoimmune rheumatic diseases (SARDs) exhibit extensive heterogeneity in
clinical presentation, disease course, and treatment response. Therefore, precision …

An introduction to machine learning and analysis of its use in rheumatic diseases

KM Kingsmore, CE Puglisi, AC Grammer… - Nature Reviews …, 2021 - nature.com
Abstract Machine learning (ML) is a computerized analytical technique that is being
increasingly employed in biomedicine. ML often provides an advantage over explicitly …

Multiclass wound image classification using an ensemble deep CNN-based classifier

B Rostami, DM Anisuzzaman, C Wang… - Computers in Biology …, 2021 - Elsevier
Acute and chronic wounds are a challenge to healthcare systems around the world and
affect many people's lives annually. Wound classification is a key step in wound diagnosis …

Machine learning identifies clusters of longitudinal autoantibody profiles predictive of systemic lupus erythematosus disease outcomes

MY Choi, I Chen, AE Clarke, MJ Fritzler… - Annals of the …, 2023 - ard.bmj.com
Objectives A novel longitudinal clustering technique was applied to comprehensive
autoantibody data from a large, well-characterised, multinational inception systemic lupus …

Disease-associated and patient-specific immune cell signatures in juvenile-onset systemic lupus erythematosus: patient stratification using a machine-learning …

GA Robinson, J Peng, P Dönnes, L Coelewij… - The Lancet …, 2020 - thelancet.com
Background Juvenile-onset systemic lupus erythematosus (SLE) is a rare autoimmune
rheumatic disease characterised by more severe disease manifestations, earlier damage …