Proteogenomic data and resources for pan-cancer analysis

Y Li, Y Dou, FDV Leprevost, Y Geffen, AP Calinawan… - Cancer cell, 2023 - cell.com
Summary The National Cancer Institute's Clinical Proteomic Tumor Analysis Consortium
(CPTAC) investigates tumors from a proteogenomic perspective, creating rich multi-omics …

The present and future of the Cancer Dependency Map

R Arafeh, T Shibue, JM Dempster, WC Hahn… - Nature Reviews …, 2024 - nature.com
Despite tremendous progress in the past decade, the complex and heterogeneous nature of
cancer complicates efforts to identify new therapies and therapeutic combinations that …

[HTML][HTML] Pan-cancer proteogenomics connects oncogenic drivers to functional states

Y Li, E Porta-Pardo, C Tokheim, MH Bailey, TM Yaron… - Cell, 2023 - cell.com
Cancer driver events refer to key genetic aberrations that drive oncogenesis; however, their
exact molecular mechanisms remain insufficiently understood. Here, our multi-omics pan …

[HTML][HTML] Integrative multi-omic cancer profiling reveals DNA methylation patterns associated with therapeutic vulnerability and cell-of-origin

WW Liang, RJH Lu, RG Jayasinghe, SM Foltz… - Cancer cell, 2023 - cell.com
DNA methylation plays a critical role in establishing and maintaining cellular identity.
However, it is frequently dysregulated during tumor development and is closely intertwined …

Crossing epigenetic frontiers: the intersection of novel histone modifications and diseases

W Yao, X Hu, X Wang - Signal Transduction and Targeted Therapy, 2024 - nature.com
Histone post-translational modifications (HPTMs), as one of the core mechanisms of
epigenetic regulation, are garnering increasing attention due to their close association with …

Unlocking the multifaceted molecular functions and diverse disease implications of lactylation

F **g, J Zhang, H Zhang, T Li - Biological Reviews, 2025 - Wiley Online Library
In recent years, a significant breakthrough has emerged in biology, the identification of
lactylation, a novel post‐translational process. This intriguing modification is not limited to a …

USP33 facilitates the ovarian cancer progression via deubiquitinating and stabilizing CBX2

J Chen, W Shan, Q Jia, Y Chen, W Jiang, Y Tian… - Oncogene, 2024 - nature.com
Post-translational modifications of proteins play a pivotal role in both the initiation and
progression of ovarian cancer. Despite the recognition of USP33 as a significant factor in …

[PDF][PDF] DNA methylation profiles in cancer: functions, therapy, and beyond

J Zhu, Y Yang, L Li, J Tang… - Cancer Biology & Medicine, 2023 - cancerbiomed.org
DNA methylation, a reversible post-replication modification, defines gene expression and
function in different physiologic processes. Hypomethylation is quite common among global …

Artificial intelligence with mass spectrometry-based multimodal molecular profiling methods for advancing therapeutic discovery of infectious diseases

J Liu, C Bao, J Zhang, Z Han, H Fang, H Lu - Pharmacology & Therapeutics, 2024 - Elsevier
Infectious diseases, driven by a diverse array of pathogens, can swiftly undermine public
health systems. Accurate diagnosis and treatment of infectious diseases—centered around …

Functions and mechanisms of non‐histone protein acetylation in plants

X **, X Li, JA Teixeira da Silva… - Journal of Integrative Plant …, 2024 - Wiley Online Library
Lysine acetylation, an evolutionarily conserved post‐translational protein modification, is
reversibly catalyzed by lysine acetyltransferases and lysine deacetylases. Lysine …