Deep learning methods for molecular representation and property prediction
Highlights•The deep learning method could effectively represent the molecular structure and
predict molecular property through diversified models.•One, two, and three-dimensional …
predict molecular property through diversified models.•One, two, and three-dimensional …
Accelerated chemical science with AI
In light of the pressing need for practical materials and molecular solutions to renewable
energy and health problems, to name just two examples, one wonders how to accelerate …
energy and health problems, to name just two examples, one wonders how to accelerate …
Calibrated geometric deep learning improves kinase–drug binding predictions
Protein kinases regulate various cellular functions and hold significant pharmacological
promise in cancer and other diseases. Although kinase inhibitors are one of the largest …
promise in cancer and other diseases. Although kinase inhibitors are one of the largest …
Open challenges in develo** generalizable large-scale machine-learning models for catalyst discovery
The development of machine-learned potentials for catalyst discovery has predominantly
been focused on very specific chemistries and material compositions. While they are …
been focused on very specific chemistries and material compositions. While they are …
Modeling the solid electrolyte interphase: Machine learning as a game changer?
The solid electrolyte interphase (SEI) is a complex passivation layer that forms in situ on
many battery electrodes such as lithium‐intercalated graphite or lithium metal anodes. Its …
many battery electrodes such as lithium‐intercalated graphite or lithium metal anodes. Its …
Calibration and generalizability of probabilistic models on low-data chemical datasets with DIONYSUS
Deep learning models that leverage large datasets are often the state of the art for modelling
molecular properties. When the datasets are smaller (< 2000 molecules), it is not clear that …
molecular properties. When the datasets are smaller (< 2000 molecules), it is not clear that …
Large-scale evaluation of k-fold cross-validation ensembles for uncertainty estimation
TM Dutschmann, L Kinzel, A Ter Laak… - Journal of …, 2023 - Springer
It is insightful to report an estimator that describes how certain a model is in a prediction,
additionally to the prediction alone. For regression tasks, most approaches implement a …
additionally to the prediction alone. For regression tasks, most approaches implement a …
Explainable uncertainty quantifications for deep learning-based molecular property prediction
CI Yang, YP Li - Journal of Cheminformatics, 2023 - Springer
Quantifying uncertainty in machine learning is important in new research areas with scarce
high-quality data. In this work, we develop an explainable uncertainty quantification method …
high-quality data. In this work, we develop an explainable uncertainty quantification method …
Application of message passing neural networks for molecular property prediction
Accurate molecular property prediction, as one of the classical cheminformatics topics, plays
a prominent role in the fields of computer-aided drug design. For instance, property …
a prominent role in the fields of computer-aided drug design. For instance, property …
MaterialsAtlas. org: a materials informatics web app platform for materials discovery and survey of state-of-the-art
The availability and easy access of large-scale experimental and computational materials
data have enabled the emergence of accelerated development of algorithms and models for …
data have enabled the emergence of accelerated development of algorithms and models for …