Privacy risks of general-purpose language models

X Pan, M Zhang, S Ji, M Yang - 2020 IEEE Symposium on …, 2020 - ieeexplore.ieee.org
Recently, a new paradigm of building general-purpose language models (eg, Google's Bert
and OpenAI's GPT-2) in Natural Language Processing (NLP) for text feature extraction, a …

Signal processing in sequence analysis: advances in eukaryotic gene prediction

M Akhtar, J Epps, E Ambikairajah - IEEE journal of selected …, 2008 - ieeexplore.ieee.org
Genomic sequence processing has been an active area of research for the past two
decades and has increasingly attracted the attention of digital signal processing researchers …

Prediction of donor splice sites using random forest with a new sequence encoding approach

PK Meher, TK Sahu, AR Rao - BioData mining, 2016 - Springer
Background Detection of splice sites plays a key role for predicting the gene structure and
thus development of efficient analytical methods for splice site prediction is vital. This paper …

Deepss: Exploring splice site motif through convolutional neural network directly from dna sequence

X Du, Y Yao, Y Diao, H Zhu, Y Zhang, S Li - IEEE Access, 2018 - ieeexplore.ieee.org
Splice sites prediction and interpretation are crucial to the understanding of complicated
mechanisms underlying gene transcriptional regulation. Although existing computational …

Identification of donor splice sites using support vector machine: a computational approach based on positional, compositional and dependency features

PK Meher, TK Sahu, AR Rao, SD Wahi - Algorithms for molecular biology, 2016 - Springer
Background Identification of splice sites is essential for annotation of genes. Though existing
approaches have achieved an acceptable level of accuracy, still there is a need for further …

[PDF][PDF] A novel splice site prediction method using support vector machine

D Wei, H Zhang, Y Wei, Q Jiang - Journal of Computational Information …, 2013 - Citeseer
We present a novel classification method for splice sites prediction using support vector
machine (SVM). The method first represents input sequences by sequence-based features …

Towards a HPC-oriented parallel implementation of a learning algorithm for bioinformatics applications

G D'Angelo, S Rampone - BMC bioinformatics, 2014 - Springer
Background The huge quantity of data produced in Biomedical research needs
sophisticated algorithmic methodologies for its storage, analysis, and processing. High …

A dual-sensor enabled indoor localization system with crowdsensing spot survey

C Zhang, J Luo, J Wu - 2014 IEEE International Conference on …, 2014 - ieeexplore.ieee.org
We present MaWi-a smart phone based scalable indoor localization system. Central to
MaWi is a novel framework combining two self-contained but complementary localization …

A statistical approach for 5′ splice site prediction using short sequence motifs and without encoding sequence data

PK Meher, TK Sahu, AR Rao, SD Wahi - BMC bioinformatics, 2014 - Springer
Background Most of the approaches for splice site prediction are based on machine learning
techniques. Though, these approaches provide high prediction accuracy, the window …

Evaluation of noise reduction techniques in the splice junction recognition problem

AC Lorena, AC de Carvalho - Genetics and Molecular Biology, 2004 - SciELO Brasil
The Human Genome Project has generated a large amount of sequence data. A number of
works are currently concerned with analyzing these data. One of the analyses carried out is …