Quorum sensing for population-level control of bacteria and potential therapeutic applications

S Wu, J Liu, C Liu, A Yang, J Qiao - Cellular and Molecular Life Sciences, 2020 - Springer
Quorum sensing (QS), a microbial cell-to-cell communication process, dynamically regulates
a variety of metabolism and physiological activities. In this review, we provide an update on …

Foundations for the design and implementation of synthetic genetic circuits

AL Slusarczyk, A Lin, R Weiss - Nature Reviews Genetics, 2012 - nature.com
Synthetic gene circuits are designed to program new biological behaviour, dynamics and
logic control. For all but the simplest synthetic phenotypes, this requires a structured …

[KİTAP][B] Stochastic processes in cell biology

PC Bressloff - 2014 - Springer
One of the major challenges in modern biology is to understand how the molecular
components of a living cell operate in a highly noisy environment. What are the specific …

The clock gene circuit in Arabidopsis includes a repressilator with additional feedback loops

A Pokhilko, AP Fernández, KD Edwards… - Molecular systems …, 2012 - embopress.org
Circadian clocks synchronise biological processes with the day/night cycle, using molecular
mechanisms that include interlocked, transcriptional feedback loops. Recent experiments …

Synthetic in vitro transcriptional oscillators

J Kim, E Winfree - Molecular systems biology, 2011 - embopress.org
The construction of synthetic biochemical circuits from simple components illuminates how
complex behaviors can arise in chemistry and builds a foundation for future biological …

[HTML][HTML] OsTOC1 plays dual roles in the regulation of plant circadian clock by functioning as a direct transcription activator or repressor

J Li, JX Qiu, QH Zeng, Y Zhuang, N Zhang, SX Xu, J **… - Cell Reports, 2023 - cell.com
Plant clock function relies on precise timing of gene expression through complex regulatory
networks consisting of activators and repressors at the core of oscillators. Although TIMING …

[KİTAP][B] Dynamics and Bifurcation in Networks: Theory and Applications of Coupled Differential Equations

M Golubitsky, I Stewart - 2023 - SIAM
The biologist JBS Haldane, when asked what we can learn about the Creator by examining
the world, is said to have replied “an inordinate fondness for beetles”[705]. Today's …

From resonance to chaos by modulating spatiotemporal patterns through a synthetic optogenetic oscillator

JH Park, G Holló, Y Schaerli - Nature Communications, 2024 - nature.com
Oscillations are a recurrent phenomenon in biological systems across scales, but
deciphering their fundamental principles is very challenging. Here, we tackle this challenge …

Developmental function and state transitions of a gene expression oscillator in Caenorhabditis elegans

MWM Meeuse, YP Hauser… - Molecular Systems …, 2020 - embopress.org
Gene expression oscillators can structure biological events temporally and spatially.
Different biological functions benefit from distinct oscillator properties. Thus, finite …

The intracellular dynamics of circadian clocks reach for the light of ecology and evolution

AJ Millar - Annual review of plant biology, 2016 - annualreviews.org
A major challenge for biology is to extend our understanding of molecular regulation from
the simplified conditions of the laboratory to ecologically relevant environments. Tractable …