Embracing imperfect datasets: A review of deep learning solutions for medical image segmentation

N Tajbakhsh, L Jeyaseelan, Q Li, JN Chiang, Z Wu… - Medical image …, 2020 - Elsevier
The medical imaging literature has witnessed remarkable progress in high-performing
segmentation models based on convolutional neural networks. Despite the new …

Nuclei and glands instance segmentation in histology images: a narrative review

ES Nasir, A Parvaiz, MM Fraz - Artificial Intelligence Review, 2023 - Springer
Examination of tissue biopsy and quantification of the various characteristics of cellular
processes are clinical benchmarks in cancer diagnosis. Nuclei and glands instance …

Deep multi-magnification networks for multi-class breast cancer image segmentation

DJ Ho, DVK Yarlagadda, TM D'Alfonso… - … Medical Imaging and …, 2021 - Elsevier
Pathologic analysis of surgical excision specimens for breast carcinoma is important to
evaluate the completeness of surgical excision and has implications for future treatment …

DeepSynth: Three-dimensional nuclear segmentation of biological images using neural networks trained with synthetic data

KW Dunn, C Fu, DJ Ho, S Lee, S Han, P Salama… - Scientific reports, 2019 - nature.com
The scale of biological microscopy has increased dramatically over the past ten years, with
the development of new modalities supporting collection of high-resolution fluorescence …

Evaluation of deep learning architectures for complex immunofluorescence nuclear image segmentation

F Kromp, L Fischer, E Bozsaky… - … on Medical Imaging, 2021 - ieeexplore.ieee.org
Separating and labeling each nuclear instance (instance-aware segmentation) is the key
challenge in nuclear image segmentation. Deep Convolutional Neural Networks have been …

Computational nuclei segmentation methods in digital pathology: a survey

T Hayakawa, VBS Prasath, H Kawanaka… - … Methods in Engineering, 2021 - Springer
Pathology is an important field in modern medicine. In particular, the step of nuclei
segmentation is an important step in cancer analysis, diagnosis, and grading because …

Nisnet3d: Three-dimensional nuclear synthesis and instance segmentation for fluorescence microscopy images

L Wu, A Chen, P Salama, S Winfree, KW Dunn… - Scientific Reports, 2023 - nature.com
The primary step in tissue cytometry is the automated distinction of individual cells
(segmentation). Since cell borders are seldom labeled, cells are generally segmented by …

Automatic disease stage classification of glioblastoma multiforme histopathological images using deep convolutional neural network

A Yonekura, H Kawanaka, VBS Prasath… - Biomedical engineering …, 2018 - Springer
In the field of computational histopathology, computer-assisted diagnosis systems are
important in obtaining patient-specific diagnosis for various diseases and help precision …

Deep interactive learning: an efficient labeling approach for deep learning-based osteosarcoma treatment response assessment

DJ Ho, NP Agaram, PJ Schüffler, CM Vanderbilt… - … Image Computing and …, 2020 - Springer
Osteosarcoma is the most common malignant primary bone tumor. Standard treatment
includes pre-operative chemotherapy followed by surgical resection. The response to …

Nuclei segmentation of fluorescence microscopy images using three dimensional convolutional neural networks

D Joon Ho, C Fu, P Salama… - Proceedings of the …, 2017 - openaccess.thecvf.com
Fluorescence microscopy enables one to visualize subcellular structures of living tissue or
cells in three dimensions. This is especially true for two-photon microscopy using near …