[HTML][HTML] Cellular anatomy of the mouse primary motor cortex

R Muñoz-Castañeda, B Zingg, KS Matho, X Chen… - Nature, 2021 - nature.com
An essential step toward understanding brain function is to establish a structural framework
with cellular resolution on which multi-scale datasets spanning molecules, cells, circuits and …

Merged magnetic resonance and light sheet microscopy of the whole mouse brain

GA Johnson, Y Tian, DG Ashbrook… - Proceedings of the …, 2023 - National Acad Sciences
We have developed workflows to align 3D magnetic resonance histology (MRH) of the
mouse brain with light sheet microscopy (LSM) and 3D delineations of the same specimen …

How innovations in methodology offer new prospects for volume electron microscopy

AJ Kievits, R Lane, EC Carroll… - Journal of …, 2022 - Wiley Online Library
Detailed knowledge of biological structure has been key in understanding biology at several
levels of organisation, from organs to cells and proteins. Volume electron microscopy …

[HTML][HTML] Application of the hierarchical bootstrap to multi-level data in neuroscience

V Saravanan, GJ Berman, SJ Sober - Neurons, behavior, data …, 2020 - ncbi.nlm.nih.gov
A common feature in many neuroscience datasets is the presence of hierarchical data
structures, most commonly recording the activity of multiple neurons in multiple animals …

[PDF][PDF] Upscaling X-ray nanoimaging to macroscopic specimens

M Du, Z Di, D Gürsoy, RP **an… - Journal of applied …, 2021 - journals.iucr.org
Upscaling X-ray nanoimaging to macroscopic specimens has the potential for providing
insights across multiple length scales, but its feasibility has long been an open question. By …

Deep learning techniques and COVID-19 drug discovery: Fundamentals, state-of-the-art and future directions

MB Jamshidi, A Lalbakhsh, J Talla, Z Peroutka… - … Technologies During the …, 2021 - Springer
The world is in a frustrating situation, which is exacerbating due to the time-consuming
process of the COVID-19 vaccine design and production. This chapter provides a …

Is neuroscience FAIR? A call for collaborative standardisation of neuroscience data

JB Poline, DN Kennedy, FT Sommer, GA Ascoli… - Neuroinformatics, 2022 - Springer
In this perspective article, we consider the critical issue of data and other research object
standardisation and, specifically, how international collaboration, and organizations such as …

CEM500K, a large-scale heterogeneous unlabeled cellular electron microscopy image dataset for deep learning

R Conrad, K Narayan - Elife, 2021 - elifesciences.org
Automated segmentation of cellular electron microscopy (EM) datasets remains a challenge.
Supervised deep learning (DL) methods that rely on region-of-interest (ROI) annotations …

Ethics along the continuum of research involving persons with disorders of consciousness

A Lewis, MJ Young, B Rohaut, RJ Jox, J Claassen… - Neurocritical care, 2023 - Springer
Interest in disorders of consciousness (DoC) has grown substantially over the past decade
and has illuminated the importance of improving understanding of DoC biology; care needs …

A survey of visualization and analysis in high‐resolution connectomics

J Beyer, J Troidl, S Boorboor… - Computer Graphics …, 2022 - Wiley Online Library
The field of connectomics aims to reconstruct the wiring diagram of Neurons and synapses
to enable new insights into the workings of the brain. Reconstructing and analyzing the …