DNA–protein interaction: identification, prediction and data analysis

A Emamjomeh, D Choobineh, B Hajieghrari… - Molecular biology …, 2019 - Springer
Life in living organisms is dependent on specific and purposeful interaction between other
molecules. Such purposeful interactions make the various processes inside the cells and the …

Intermolecular interactions of cardiac transcription factors NKX2. 5 and TBX5

L Pradhan, S Gopal, S Li, S Ashur… - Biochemistry, 2016 - ACS Publications
Heart development in mammalian systems is controlled by combinatorial interactions of
master cardiac transcription factors such as TBX5 and NKX2. 5. They bind to …

Investigation of the effect of UV-B light on Arabidopsis MYB4 (AtMYB4) transcription factor stability and detection of a putative MYB4-binding motif in the promoter proximal …

M Mitra, P Agarwal, A Kundu, V Banerjee, S Roy - PLoS One, 2019 - journals.plos.org
Here, we have investigated the possible effect of UV-B light on the folding/unfolding
properties and stability of Arabidopsis thaliana MYB4 (AtMYB4) transcription factor in vitro by …

Discovery of Virus-Host interactions using bioinformatic tools

C Marques-Pereira, M Pires, IS Moreira - Methods in Cell Biology, 2022 - Elsevier
Viruses are a diverse biological group capable of infecting several hosts such as bacteria,
plants, and animals, including humans. Viral infections constitute a threat to the human …

Structural intermediates of a DNA–ligase complex illuminate the role of the catalytic metal ion and mechanism of phosphodiester bond formation

A Williamson, HKS Leiros - Nucleic acids research, 2019 - academic.oup.com
DNA ligases join adjacent 5′ phosphate (5′ P) and 3′ hydroxyl (3′ OH) termini of
double-stranded DNA via a three-step mechanism requiring a nucleotide cofactor and …

DNA binding with a minimal scaffold: structure–function analysis of Lig E DNA ligases

A Williamson, M Grgic, HKS Leiros - Nucleic Acids Research, 2018 - academic.oup.com
DNA ligases join breaks in the phosphodiester backbone of DNA by catalysing the formation
of bonds between opposing 5′ P and 3′ OH ends in an adenylation-dependent manner …

Biochemical characterization of ferric uptake regulator (Fur) from Aliivibrio salmonicida. Map** the DNA sequence specificity through binding studies and structural …

K Berg, HL Pedersen, I Leiros - Biometals, 2020 - Springer
Iron is an essential nutrient for bacteria, however its propensity to form toxic hydroxyl
radicals at high intracellular concentrations, requires its acquisition to be tightly regulated …

Crystal structure of FOXC2 in complex with DNA target

S Li, L Pradhan, S Ashur, A Joshi, HJ Nam - ACS omega, 2019 - ACS Publications
Forkhead transcription factor C2 (FOXC2) is a transcription factor regulating vascular and
lymphatic development, and its mutations are linked to lymphedema-distichiasis syndrome …

Structural Studies of FOXC2 Proteins and Inhibitor Development

S Li - 2019 - search.proquest.com
The discovery and studies of cancer stem cells population shed light on the recurrence and
invasive mechanisms of the malignant tumor. As the culprit of the malignancy, cancer stems …

[PDF][PDF] Prediction of protein and nucleic acid interactions

D Cirillo - 2017 - core.ac.uk
The purpose of my doctoral studies has been the development of bioinformatics methods to
quantitatively evaluate associations between proteins and nucleic acids (NAs). This thesis …