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[CARTE][B] Handbook of data structures and applications
Although there are many advanced and specialized texts and handbooks on algorithms,
until now there was no book that focused exclusively on the wide variety of data structures …
until now there was no book that focused exclusively on the wide variety of data structures …
Compressed representations of sequences and full-text indexes
Given a sequence S= s 1 s 2… sn of integers smaller than r= O (polylog (n)), we show how S
can be represented using nH 0 (S)+ o (n) bits, so that we can know any sq, as well as …
can be represented using nH 0 (S)+ o (n) bits, so that we can know any sq, as well as …
Optimal-time text indexing in BWT-runs bounded space
Indexing highly repetitive texts—such as genomic databases, software repositories and
versioned text collections—has become an important problem since the turn of the …
versioned text collections—has become an important problem since the turn of the …
Succincter
M Patrascu - 2008 49th Annual IEEE Symposium on …, 2008 - ieeexplore.ieee.org
We can represent an array of n values from {0, 1, 2} using ceil (n log_2 3) bits (arithmetic
coding), but then we cannot retrieve a single element efficiently. Instead, we can encode …
coding), but then we cannot retrieve a single element efficiently. Instead, we can encode …
On compressing and indexing repetitive sequences
S Kreft, G Navarro - Theoretical Computer Science, 2013 - Elsevier
We introduce LZ-End, a new member of the Lempel–Ziv family of text compressors, which
achieves compression ratios close to those of LZ77 but is much faster at extracting arbitrary …
achieves compression ratios close to those of LZ77 but is much faster at extracting arbitrary …
Rank/Select Operations on Large Alphabets: a Tool for Text
A Golynski - Proceedings of the Seventeenth Annual ACM-SIAM …, 2006 - books.google.com
We consider a generalization of the problem of sup-porting rank and select queries on
binary strings. Given a string of length n from an alphabet of size σ, we give the first …
binary strings. Given a string of length n from an alphabet of size σ, we give the first …
Compressed text indexes: From theory to practice
P Ferragina, R González, G Navarro… - Journal of Experimental …, 2009 - dl.acm.org
A compressed full-text self-index represents a text in a compressed form and still answers
queries efficiently. This represents a significant advancement over the (full-) text indexing …
queries efficiently. This represents a significant advancement over the (full-) text indexing …
Compressing and indexing labeled trees, with applications
Consider an ordered, static tree T where each node has a label from alphabet Σ. Tree T may
be of arbitrary degree and shape. Our goal is designing a compressed storage scheme of T …
be of arbitrary degree and shape. Our goal is designing a compressed storage scheme of T …
Practical rank/select queries over arbitrary sequences
We present a practical study on the compact representation of sequences supporting rank,
select, and access queries. While there are several theoretical solutions to the problem, only …
select, and access queries. While there are several theoretical solutions to the problem, only …
LZ77-like compression with fast random access
S Kreft, G Navarro - 2010 Data Compression Conference, 2010 - ieeexplore.ieee.org
We introduce an alternative Lempel-Ziv text parsing, LZ-End, that converges to the entropy
and in practice gets very close to LZ77. LZ-End forces sources to finish at the end of a …
and in practice gets very close to LZ77. LZ-End forces sources to finish at the end of a …