[HTML][HTML] Classical and reactive molecular dynamics: Principles and applications in combustion and energy systems
Molecular dynamics (MD) has evolved into a ubiquitous, versatile and powerful
computational method for fundamental research in science branches such as biology …
computational method for fundamental research in science branches such as biology …
Protein interactions with polymer coatings and biomaterials
Protein adsorption is considered to be the most important factor of the interaction between
polymeric biomaterials and body fluids or tissues. Water‐mediated hydrophobic and …
polymeric biomaterials and body fluids or tissues. Water‐mediated hydrophobic and …
Modeling and simulations of polymers: a roadmap
Molecular modeling and simulations are invaluable tools for the polymer science and
engineering community. These computational approaches enable predictions and provide …
engineering community. These computational approaches enable predictions and provide …
Perspective: Coarse-grained models for biomolecular systems
WG Noid - The Journal of chemical physics, 2013 - pubs.aip.org
By focusing on essential features, while averaging over less important details, coarse-
grained (CG) models provide significant computational and conceptual advantages with …
grained (CG) models provide significant computational and conceptual advantages with …
A review of advancements in coarse-grained molecular dynamics simulations
Over the last few years, coarse-grained molecular dynamics has emerged as a way to model
large and complex systems in an efficient and inexpensive manner due to its lowered …
large and complex systems in an efficient and inexpensive manner due to its lowered …
[BOOK][B] Coarse-graining of condensed phase and biomolecular systems
GA Voth - 2008 - taylorfrancis.com
Exploring recent developments in the field, Coarse-Graining of Condensed Phase and
Biomolecular Systems examines systematic ways of constructing coarse-grained …
Biomolecular Systems examines systematic ways of constructing coarse-grained …
Data-driven methods for accelerating polymer design
TK Patra - ACS Polymers Au, 2021 - ACS Publications
Optimal design of polymers is a challenging task due to their enormous chemical and
configurational space. Recent advances in computations, machine learning, and increasing …
configurational space. Recent advances in computations, machine learning, and increasing …
Force fields and molecular dynamics simulations
MA González - École thématique de la Société Française de …, 2011 - neutron-sciences.org
The objective of this review is to serve as an introductory guide for the non-expert to the
exciting field of Molecular Dynamics (MD). MD simulations generate a phase space …
exciting field of Molecular Dynamics (MD). MD simulations generate a phase space …
[HTML][HTML] DeePCG: Constructing coarse-grained models via deep neural networks
We introduce a general framework for constructing coarse-grained potential models without
ad hoc approximations such as limiting the potential to two-and/or three-body contributions …
ad hoc approximations such as limiting the potential to two-and/or three-body contributions …
Multi-property fitting and parameterization of a coarse grained model for aqueous surfactants
A new systematic approach to build coarse-grained (CG) molecular models for
surfactants/water systems is proposed. A step-by-step approach using several molecular …
surfactants/water systems is proposed. A step-by-step approach using several molecular …