Mitochondrial metagenomics: letting the genes out of the bottle

A Crampton-Platt, DW Yu, X Zhou, AP Vogler - GigaScience, 2016 - academic.oup.com
Abstract 'Mitochondrial metagenomics'(MMG) is a methodology for shotgun sequencing of
total DNA from specimen mixtures and subsequent bioinformatic extraction of mitochondrial …

Evolutionary history of Coleoptera revealed by extensive sampling of genes and species

SQ Zhang, LH Che, Y Li, D Liang, H Pang… - Nature …, 2018 - nature.com
Beetles (Coleoptera) are the most diverse and species-rich group of insects, and a robust,
time-calibrated phylogeny is fundamental to understanding macroevolutionary processes …

Connecting high‐throughput biodiversity inventories: Opportunities for a site‐based genomic framework for global integration and synthesis

P Arribas, C Andújar, MI Bidartondo… - Molecular …, 2021 - Wiley Online Library
High‐throughput sequencing (HTS) is increasingly being used for the characterization and
monitoring of biodiversity. If applied in a structured way, across broad geographical scales, it …

Protecting an ecosystem service: approaches to understanding and mitigating threats to wild insect pollinators

RJ Gill, KCR Baldock, MJF Brown, JE Cresswell… - Advances in ecological …, 2016 - Elsevier
Insect pollination constitutes an ecosystem service of global importance, providing
significant economic and aesthetic benefits as well as cultural value to human society …

Introducing BASE: the Biomes of Australian Soil Environments soil microbial diversity database

A Bissett, A Fitzgerald, T Meintjes, PM Mele, F Reith… - GigaScience, 2016 - Springer
Background Microbial inhabitants of soils are important to ecosystem and planetary
functions, yet there are large gaps in our knowledge of their diversity and ecology. The …

Performance of amplicon and shotgun sequencing for accurate biomass estimation in invertebrate community samples

I Bista, GR Carvalho, M Tang, K Walsh… - Molecular Ecology …, 2018 - Wiley Online Library
New applications of DNA and RNA sequencing are expanding the field of biodiversity
discovery and ecological monitoring, yet questions remain regarding precision and …

Sorting specimen‐rich invertebrate samples with cost‐effective NGS barcodes: Validating a reverse workflow for specimen processing

WY Wang, A Srivathsan, M Foo… - Molecular ecology …, 2018 - Wiley Online Library
Biologists frequently sort specimen‐rich samples to species. This process is daunting when
based on morphology, and disadvantageous if performed using molecular methods that …

Massive gene rearrangements of mitochondrial genomes and implications for the phylogeny of Trichoptera (Insecta)

X Ge, L Peng, AP Vogler, JC Morse… - Systematic …, 2023 - Wiley Online Library
Mitochondrial genomes have been widely used for phylogenetic reconstruction and
evolutionary analysis in various groups of Insecta. Gene rearrangements in the mitogenome …

High‐throughput monitoring of wild bee diversity and abundance via mitogenomics

M Tang, CJ Hardman, Y Ji, G Meng… - Methods in Ecology …, 2015 - Wiley Online Library
Bee populations and other pollinators face multiple, synergistically acting threats, which
have led to population declines, loss of local species richness and pollination services, and …

Mitochondrial phylogenomics of the Hymenoptera

P Tang, J Zhu, B Zheng, S Wei, M Sharkey… - Molecular Phylogenetics …, 2019 - Elsevier
The insect order Hymenoptera presents marvelous morphological and ecological diversity.
Higher-level hymenopteran relationships remain controversial, even after recent …