A survey on deep learning for named entity recognition
Named entity recognition (NER) is the task to identify mentions of rigid designators from text
belonging to predefined semantic types such as person, location, organization etc. NER …
belonging to predefined semantic types such as person, location, organization etc. NER …
AI-based language models powering drug discovery and development
The discovery and development of new medicines is expensive, time-consuming, and often
inefficient, with many failures along the way. Powered by artificial intelligence (AI), language …
inefficient, with many failures along the way. Powered by artificial intelligence (AI), language …
BioBERT: a pre-trained biomedical language representation model for biomedical text mining
Motivation Biomedical text mining is becoming increasingly important as the number of
biomedical documents rapidly grows. With the progress in natural language processing …
biomedical documents rapidly grows. With the progress in natural language processing …
ScispaCy: fast and robust models for biomedical natural language processing
Despite recent advances in natural language processing, many statistical models for
processing text perform extremely poorly under domain shift. Processing biomedical and …
processing text perform extremely poorly under domain shift. Processing biomedical and …
Adaptive methods for nonconvex optimization
Adaptive gradient methods that rely on scaling gradients down by the square root of
exponential moving averages of past squared gradients, such RMSProp, Adam, Adadelta …
exponential moving averages of past squared gradients, such RMSProp, Adam, Adadelta …
A comparative study of pretrained language models for long clinical text
Objective Clinical knowledge-enriched transformer models (eg, ClinicalBERT) have state-of-
the-art results on clinical natural language processing (NLP) tasks. One of the core …
the-art results on clinical natural language processing (NLP) tasks. One of the core …
Named entity recognition and relation detection for biomedical information extraction
The number of scientific publications in the literature is steadily growing, containing our
knowledge in the biomedical, health, and clinical sciences. Since there is currently no …
knowledge in the biomedical, health, and clinical sciences. Since there is currently no …
Enriching contextualized language model from knowledge graph for biomedical information extraction
Biomedical information extraction (BioIE) is an important task. The aim is to analyze
biomedical texts and extract structured information such as named entities and semantic …
biomedical texts and extract structured information such as named entities and semantic …
BERN2: an advanced neural biomedical named entity recognition and normalization tool
In biomedical natural language processing, named entity recognition (NER) and named
entity normalization (NEN) are key tasks that enable the automatic extraction of biomedical …
entity normalization (NEN) are key tasks that enable the automatic extraction of biomedical …
COVID-19 literature knowledge graph construction and drug repurposing report generation
To combat COVID-19, both clinicians and scientists need to digest vast amounts of relevant
biomedical knowledge in scientific literature to understand the disease mechanism and …
biomedical knowledge in scientific literature to understand the disease mechanism and …