In Silico Prediction of Chemical Toxicity for Drug Design Using Machine Learning Methods and Structural Alerts

H Yang, L Sun, W Li, G Liu, Y Tang - Frontiers in chemistry, 2018 - frontiersin.org
During drug development, safety is always the most important issue, including a variety of
toxicities and adverse drug effects, which should be evaluated in preclinical and clinical trial …

In silico toxicology for the pharmaceutical sciences

LG Valerio Jr - Toxicology and applied pharmacology, 2009 - Elsevier
The applied use of in silico technologies (aka computational toxicology, in silico toxicology,
computer-assisted tox, e-tox, i-drug discovery, predictive ADME, etc.) for predicting …

admetSAR: a comprehensive source and free tool for assessment of chemical ADMET properties

F Cheng, W Li, Y Zhou, J Shen, Z Wu, G Liu, PW Lee… - 2012 - ACS Publications
Absorption, distribution, metabolism, excretion, and toxicity (ADMET) properties play key
roles in the discovery/development of drugs, pesticides, food additives, consumer products …

Open Babel: An open chemical toolbox

NM O'Boyle, M Banck, CA James, C Morley… - Journal of …, 2011 - Springer
Background A frequent problem in computational modeling is the interconversion of
chemical structures between different formats. While standard interchange formats exist (for …

A survey of algorithms for dense subgraph discovery

VE Lee, N Ruan, R **, C Aggarwal - Managing and mining graph data, 2010 - Springer
In this chapter, we present a survey of algorithms for dense subgraph discovery. The
problem of dense subgraph discovery is closely related to clustering though the two …

Machine learning in virtual screening

JL Melville, EK Burke, JD Hirst - Combinatorial chemistry & high …, 2009 - ingentaconnect.com
In this review, we highlight recent applications of machine learning to virtual screening,
focusing on the use of supervised techniques to train statistical learning algorithms to …

Structure alerts for carcinogenicity, and the Salmonella assay system: a novel insight through the chemical relational databases technology

R Benigni, C Bossa - Mutation Research/Reviews in Mutation Research, 2008 - Elsevier
In the past decades, chemical carcinogenicity has been the object of mechanistic studies
that have been translated into valuable experimental (eg, the Salmonella assays system) …

Computational approaches to identify structural alerts and their applications in environmental toxicology and drug discovery

H Yang, C Lou, W Li, G Liu, Y Tang - Chemical Research in …, 2020 - ACS Publications
Structural alerts are a simple and easy way to identify toxic compounds being widely used in
environmental toxicology research and drug discovery. With the emergence of big data …

Designing drugs to avoid toxicity

GF Smith - Progress in medicinal chemistry, 2011 - Elsevier
Publisher Summary A quality development candidate compound after a positive proof of
concept clinical trial has a good chance of making it to be a marketed drug. It is the role of …

A review of the electrophilic reaction chemistry involved in covalent DNA binding

SJ Enoch, MTD Cronin - Critical reviews in toxicology, 2010 - Taylor & Francis
The need to assess the ability of a chemical to act as a mutagen or a genotoxic carcinogen
(collectively termed genotoxicity) is one of the primary requirements in regulatory toxicology …