Explaining the explainers in graph neural networks: a comparative study
Following a fast initial breakthrough in graph-based learning, Graph Neural Networks
(GNNs) have reached a widespread application in many science and engineering fields …
(GNNs) have reached a widespread application in many science and engineering fields …
AbDiffuser: full-atom generation of in-vitro functioning antibodies
We introduce AbDiffuser, an equivariant and physics-informed diffusion model for the joint
generation of antibody 3D structures and sequences. AbDiffuser is built on top of a new …
generation of antibody 3D structures and sequences. AbDiffuser is built on top of a new …
Reducing SO (3) convolutions to SO (2) for efficient equivariant GNNs
Graph neural networks that model 3D data, such as point clouds or atoms, are typically
desired to be $ SO (3) $ equivariant, ie, equivariant to 3D rotations. Unfortunately …
desired to be $ SO (3) $ equivariant, ie, equivariant to 3D rotations. Unfortunately …
Faenet: Frame averaging equivariant gnn for materials modeling
Applications of machine learning techniques for materials modeling typically involve
functions that are known to be equivariant or invariant to specific symmetries. While graph …
functions that are known to be equivariant or invariant to specific symmetries. While graph …
Artificial intelligence for science in quantum, atomistic, and continuum systems
Advances in artificial intelligence (AI) are fueling a new paradigm of discoveries in natural
sciences. Today, AI has started to advance natural sciences by improving, accelerating, and …
sciences. Today, AI has started to advance natural sciences by improving, accelerating, and …
Equivariance with learned canonicalization functions
Symmetry-based neural networks often constrain the architecture in order to achieve
invariance or equivariance to a group of transformations. In this paper, we propose an …
invariance or equivariance to a group of transformations. In this paper, we propose an …
Sign and basis invariant networks for spectral graph representation learning
We introduce SignNet and BasisNet--new neural architectures that are invariant to two key
symmetries displayed by eigenvectors:(i) sign flips, since if $ v $ is an eigenvector then so is …
symmetries displayed by eigenvectors:(i) sign flips, since if $ v $ is an eigenvector then so is …
Equivariant polynomials for graph neural networks
Abstract Graph Neural Networks (GNN) are inherently limited in their expressive power.
Recent seminal works (Xu et al., 2019; Morris et al., 2019b) introduced the Weisfeiler …
Recent seminal works (Xu et al., 2019; Morris et al., 2019b) introduced the Weisfeiler …
Smooth, exact rotational symmetrization for deep learning on point clouds
Point clouds are versatile representations of 3D objects and have found widespread
application in science and engineering. Many successful deep-learning models have been …
application in science and engineering. Many successful deep-learning models have been …
Equivariant adaptation of large pretrained models
Equivariant networks are specifically designed to ensure consistent behavior with respect to
a set of input transformations, leading to higher sample efficiency and more accurate and …
a set of input transformations, leading to higher sample efficiency and more accurate and …