[HTML][HTML] RNA dynamics in Alzheimer's disease

A Rybak-Wolf, M Plass - Molecules, 2021 - mdpi.com
Alzheimer's disease (AD) is the most common age-related neurodegenerative disorder that
heavily burdens healthcare systems worldwide. There is a significant requirement to …

[HTML][HTML] Molecular signatures underlying neurofibrillary tangle susceptibility in Alzheimer's disease

M Otero-Garcia, SU Mahajani, D Wakhloo, W Tang… - Neuron, 2022 - cell.com
Tau aggregation in neurofibrillary tangles (NFTs) is closely associated with
neurodegeneration and cognitive decline in Alzheimer's disease (AD). However, the …

Ca2+ Dyshomeostasis Disrupts Neuronal and Synaptic Function in Alzheimer's Disease

J McDaid, S Mustaly-Kalimi, GE Stutzmann - Cells, 2020 - mdpi.com
Ca2+ homeostasis is essential for multiple neuronal functions and thus, Ca2+
dyshomeostasis can lead to widespread impairment of cellular and synaptic signaling …

Stem cell-derived neurons reflect features of protein networks, neuropathology, and cognitive outcome of their aged human donors

VN Lagomarsino, RV Pearse, L Liu, YC Hsieh… - Neuron, 2021 - cell.com
We have generated a controlled and manipulable resource that captures genetic risk for
Alzheimer's disease: iPSC lines from 53 individuals coupled with RNA and proteomic …

Functional regulatory variants implicate distinct transcriptional networks in dementia

YA Cooper, N Teyssier, NM Dräger, Q Guo, JE Davis… - Science, 2022 - science.org
Predicting the function of noncoding variation is a major challenge in modern genetics. In
this study, we used massively parallel reporter assays to screen 5706 variants identified …

Rapid unleashing of macrophage efferocytic capacity via transcriptional pause release

T Tufan, G Comertpay, A Villani, GM Nelson… - Nature, 2024 - nature.com
During development, inflammation or tissue injury, macrophages may successively engulf
and process multiple apoptotic corpses via efferocytosis to achieve tissue homeostasis. How …

Protein mishandling and impaired lysosomal proteolysis generated through calcium dysregulation in Alzheimer's disease

S Mustaly-Kalimi, W Gallegos, RA Marr… - Proceedings of the …, 2022 - pnas.org
Impairments in neural lysosomal-and autophagic-mediated degradation of cellular debris
contribute to neuritic dystrophy and synaptic loss. While these are well-characterized …

[HTML][HTML] Integrated multi-omics analysis reveals the underlying molecular mechanism for developmental neurotoxicity of perfluorooctanesulfonic acid in zebrafish

H Lee, EJ Sung, S Seo, EK Min, JY Lee, I Shim… - Environment …, 2021 - Elsevier
Limited studies on multi-omics have been conducted to comprehensively investigate the
molecular mechanism underlying the developmental neurotoxicity of …

Brain high-throughput multi-omics data reveal molecular heterogeneity in Alzheimer's disease

AM Eteleeb, BC Novotny, CS Tarraga, C Sohn… - PLoS …, 2024 - journals.plos.org
Unbiased data-driven omic approaches are revealing the molecular heterogeneity of
Alzheimer disease. Here, we used machine learning approaches to integrate high …

STAMarker: determining spatial domain-specific variable genes with saliency maps in deep learning

C Zhang, K Dong, K Aihara, L Chen… - Nucleic Acids …, 2023 - academic.oup.com
Spatial transcriptomics characterizes gene expression profiles while retaining the
information of the spatial context, providing an unprecedented opportunity to understand …