[HTML][HTML] Rotaviruses

U Desselberger - Virus research, 2014 - Elsevier
Recent advances of rotavirus (RV) basic and applied research are reviewed. They consist of
determination of the RV particle structure and functions of structural proteins, classification …

Eukaryotic circular rep-encoding single-stranded DNA (CRESS DNA) viruses: ubiquitous viruses with small genomes and a diverse host range

L Zhao, K Rosario, M Breitbart, S Duffy - Advances in virus research, 2019 - Elsevier
While single-stranded DNA (ssDNA) was once thought to be a relatively rare genomic
architecture for viruses, modern metagenomics sequencing has revealed circular ssDNA …

Modular approach to customise sample preparation procedures for viral metagenomics: a reproducible protocol for virome analysis

N Conceição-Neto, M Zeller, H Lefrère, P De Bruyn… - Scientific reports, 2015 - nature.com
A major limitation for better understanding the role of the human gut virome in health and
disease is the lack of validated methods that allow high throughput virome analysis. To …

Phages and their potential to modulate the microbiome and immunity

S Federici, SP Nobs, E Elinav - Cellular & molecular immunology, 2021 - nature.com
Bacteriophages (hence termed phages) are viruses that target bacteria and have long been
considered as potential future treatments against antibiotic-resistant bacterial infection …

Public health risks associated with hepatitis E virus (HEV) as a food‐borne pathogen

EFSA Panel on Biological Hazards (BIOHAZ)… - Efsa …, 2017 - Wiley Online Library
Hepatitis E virus (HEV) is an important infection in humans in EU/EEA countries, and over
the last 10 years more than 21,000 acute clinical cases with 28 fatalities have been notified …

Identification of an avian group A rotavirus containing a novel VP4 gene with a close relationship to those of mammalian rotaviruses

E Trojnar, J Sachsenröder… - Journal of general …, 2013 - microbiologyresearch.org
Group A rotaviruses (RVAs) are an important cause of diarrhoeal illness in humans, as well
as in mammalian and avian animal species. Previous sequence analyses indicated that …

[HTML][HTML] Evaluation of rapid and simple techniques for the enrichment of viruses prior to metagenomic virus discovery

RJ Hall, J Wang, AK Todd, AB Bissielo, S Yen… - Journal of virological …, 2014 - Elsevier
The discovery of new or divergent viruses using metagenomics and high-throughput
sequencing has become more commonplace. The preparation of a sample is known to have …

Optimizing protocols for extraction of bacteriophages prior to metagenomic analyses of phage communities in the human gut

JL Castro-Mejía, MK Muhammed, W Kot, H Neve… - Microbiome, 2015 - Springer
Background The human gut is densely populated with archaea, eukaryotes, bacteria, and
their viruses, such as bacteriophages. Advances in high-throughput sequencing (HTS) as …

Nanopore sequencing as a revolutionary diagnostic tool for porcine viral enteric disease complexes identifies porcine kobuvirus as an important enteric virus

S Theuns, B Vanmechelen, Q Bernaert, W Deboutte… - Scientific reports, 2018 - nature.com
Enteric diseases in swine are often caused by different pathogens and thus metagenomics
are a useful tool for diagnostics. The capacities of nanopore sequencing for viral diagnostics …

Metagenomic approaches to assess bacteriophages in various environmental niches

S Hayes, J Mahony, A Nauta, D Van Sinderen - Viruses, 2017 - mdpi.com
Bacteriophages are ubiquitous and numerous parasites of bacteria and play a critical
evolutionary role in virtually every ecosystem, yet our understanding of the extent of the …