[PDF][PDF] Protein stability: a crystallographer's perspective

MC Deller, L Kong, B Rupp - Acta Crystallographica Section F …, 2016 - journals.iucr.org
Protein stability is a topic of major interest for the biotechnology, pharmaceutical and food
industries, in addition to being a daily consideration for academic researchers studying …

Investigating protein–ligand interactions by solution nuclear magnetic resonance spectroscopy

W Becker, KC Bhattiprolu, N Gubensäk… - …, 2018 - Wiley Online Library
Protein–ligand interactions are of fundamental importance in almost all processes in living
organisms. The ligands comprise small molecules, drugs or biological macromolecules and …

POTENCI: prediction of temperature, neighbor and pH-corrected chemical shifts for intrinsically disordered proteins

JT Nielsen, FAA Mulder - Journal of biomolecular NMR, 2018 - Springer
Chemical shifts contain important site-specific information on the structure and dynamics of
proteins. Deviations from statistical average values, known as random coil chemical shifts …

Predicting chemical shifts with graph neural networks

Z Yang, M Chakraborty, AD White - Chemical science, 2021 - pubs.rsc.org
Inferring molecular structure from Nuclear Magnetic Resonance (NMR) measurements
requires an accurate forward model that can predict chemical shifts from 3D structure …

NMR experiments for studies of dilute and condensed protein phases: application to the phase-separating protein CAPRIN1

LE Wong, TH Kim, DR Muhandiram… - Journal of the …, 2020 - ACS Publications
Intrinsically disordered proteins (IDPs) or regions of intrinsic disorder in otherwise folded
proteins (IDRs) play important roles in many different biological processes, including …

Application of NMR to studies of intrinsically disordered proteins

EB Gibbs, EC Cook, SA Showalter - Archives of biochemistry and …, 2017 - Elsevier
The prevalence of intrinsically disordered protein regions, particularly in eukaryotic proteins,
and their clear functional advantages for signaling and gene regulation have created an …

Chemical exchange

AG Palmer III, H Koss - Methods in enzymology, 2019 - Elsevier
The phenomenon of chemical or conformational exchange in NMR spectroscopy has
enabled detailed characterization of time-dependent aspects of biomolecular function …

Quality and bias of protein disorder predictors

JT Nielsen, FAA Mulder - Scientific reports, 2019 - nature.com
Disorder in proteins is vital for biological function, yet it is challenging to characterize.
Therefore, methods for predicting protein disorder from sequence are fundamental …

Single molecule FRET: A powerful tool to study intrinsically disordered proteins

SJ LeBlanc, P Kulkarni, KR Weninger - Biomolecules, 2018 - mdpi.com
Intrinsically disordered proteins (IDPs) are often modeled using ideas from polymer physics
that suggest they smoothly explore all corners of configuration space. Experimental …

Structure determination by single-particle cryo-electron microscopy: only the sky (and intrinsic disorder) is the limit

E Nwanochie, VN Uversky - International journal of molecular sciences, 2019 - mdpi.com
Traditionally, X-ray crystallography and NMR spectroscopy represent major workhorses of
structural biologists, with the lion share of protein structures reported in protein data bank …