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Single-molecule analysis and engineering of DNA motors
Molecular motors are diverse enzymes that transduce chemical energy into mechanical
work and, in doing so, perform critical cellular functions such as DNA replication and …
work and, in doing so, perform critical cellular functions such as DNA replication and …
Acoustic force spectroscopy
Force spectroscopy has become an indispensable tool to unravel the structural and
mechanochemical properties of biomolecules. Here we extend the force spectroscopy …
mechanochemical properties of biomolecules. Here we extend the force spectroscopy …
[HTML][HTML] Characterization of facilitated diffusion of tumor suppressor p53 along DNA using single-molecule fluorescence imaging
Sequence-specific DNA-binding proteins can maintain and regulate cellular functions by
accurately and quickly binding to target sequences among large amounts of nontarget DNA …
accurately and quickly binding to target sequences among large amounts of nontarget DNA …
Effect of temperature on the intrinsic flexibility of DNA and its interaction with architectural proteins
The helical structure of double-stranded DNA is destabilized by increasing temperature.
Above a critical temperature (the melting temperature), the two strands in duplex DNA …
Above a critical temperature (the melting temperature), the two strands in duplex DNA …
Protein sliding and DNA denaturation are essential for DNA organization by human mitochondrial transcription factor A
Mitochondria organize their genome in protein–DNA complexes called nucleoids. The
mitochondrial transcription factor A (TFAM), a protein that regulates mitochondrial …
mitochondrial transcription factor A (TFAM), a protein that regulates mitochondrial …
Tethered multifluorophore motion reveals equilibrium transition kinetics of single DNA double helices
We describe a tethered multifluorophore motion assay based on DNA origami for revealing
bimolecular reaction kinetics on the single-molecule level. Molecular binding partners may …
bimolecular reaction kinetics on the single-molecule level. Molecular binding partners may …
Gene repression by minimal lac loops in vivo
The inflexibility of double-stranded DNA with respect to bending and twisting is well
established in vitro. Understanding apparent DNA physical properties in vivo is a greater …
established in vitro. Understanding apparent DNA physical properties in vivo is a greater …
A new method for inferring hidden Markov models from noisy time sequences
We present a new method for inferring hidden Markov models from noisy time sequences
without the necessity of assuming a model architecture, thus allowing for the detection of …
without the necessity of assuming a model architecture, thus allowing for the detection of …
Enhanced tethered-particle motion analysis reveals viscous effects
Tethered-particle motion experiments do not require expensive or technically complex
hardware, and increasing numbers of researchers are adopting this methodology to …
hardware, and increasing numbers of researchers are adopting this methodology to …
Visual analysis of concerted cleavage by type IIF restriction enzyme SfiI in subsecond time region
Y Suzuki, JL Gilmore, SH Yoshimura, RM Henderson… - Biophysical journal, 2011 - cell.com
Many DNA regulatory factors require communication between distantly separated DNA sites
for their activity. The type IIF restriction enzyme SfiI is often used as a model system of site …
for their activity. The type IIF restriction enzyme SfiI is often used as a model system of site …