The CCP4 suite: integrative software for macromolecular crystallography

J Agirre, M Atanasova, H Bagdonas… - Biological …, 2023 - journals.iucr.org
The Collaborative Computational Project No. 4 (CCP4) is a UK-led international collective
with a mission to develop, test, distribute and promote software for macromolecular …

[HTML][HTML] CCP4i2: the new graphical user interface to the CCP4 program suite

L Potterton, J Agirre, C Ballard, K Cowtan… - Biological …, 2018 - journals.iucr.org
The CCP4 (Collaborative Computational Project, Number 4) software suite for
macromolecular structure determination by X-ray crystallography groups brings together …

Rapid covalent-probe discovery by electrophile-fragment screening

E Resnick, A Bradley, J Gan… - Journal of the …, 2019 - ACS Publications
Covalent probes can display unmatched potency, selectivity, and duration of action;
however, their discovery is challenging. In principle, fragments that can irreversibly bind their …

Fragment binding to the Nsp3 macrodomain of SARS-CoV-2 identified through crystallographic screening and computational docking

M Schuller, GJ Correy, S Gahbauer, D Fearon, T Wu… - Science …, 2021 - science.org
The severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) macrodomain within
the nonstructural protein 3 counteracts host-mediated antiviral adenosine diphosphate …

Hepatitis C virus NS3/4A inhibitors and other drug-like compounds as covalent binders of SARS-CoV-2 main protease

B Andi, D Kumaran, DF Kreitler, AS Soares… - Scientific reports, 2022 - nature.com
Severe acute respiratory syndrome-coronavirus 2 (SARS-CoV-2), which causes coronavirus
disease 2019 (COVID-19), threatens global public health. The world needs rapid …

Gentle, fast and effective crystal soaking by acoustic dispensing

PM Collins, JT Ng, R Talon, K Nekrosiute… - Biological …, 2017 - journals.iucr.org
The steady expansion in the capacity of modern beamlines for high-throughput data
collection, enabled by increasing X-ray brightness, capacity of robotics and detector speeds …

Fast fragment and compound screening pipeline at the Swiss Light Source

DP Stegmann, J Steuber, G Fritz, JA Wojdyla… - Methods in …, 2023 - Elsevier
Crystallography-based fragment screening is a highly effective technique employed in
structure-based drug discovery to expand the range of lead development opportunities. It …

Rational fragment-based design of compounds targeting the PWWP domain of the HRP family

T Vantieghem, NA Aslam, EM Osipov, M Akele… - European Journal of …, 2024 - Elsevier
Lens epithelium-derived growth factor p75 (LEDGF/p75), member of the hepatoma-derived
growth-factor-related protein (HRP) family, is a transcriptional co-activator and involved in …

Pushed to extremes: distinct effects of high temperature versus pressure on the structure of STEP

L Guerrero, A Ebrahim, BT Riley, M Kim… - Communications …, 2024 - nature.com
Protein function hinges on small shifts of three-dimensional structure. Elevating temperature
or pressure may provide experimentally accessible insights into such shifts, but the effects of …

SAMPL7 protein-ligand challenge: A community-wide evaluation of computational methods against fragment screening and pose-prediction

H Grosjean, M Işık, A Aimon, D Mobley… - Journal of Computer …, 2022 - Springer
A novel crystallographic fragment screening data set was generated and used in the
SAMPL7 challenge for protein-ligands. The SAMPL challenges prospectively assess the …